Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1261 ATGGTCGCGGCCACCAAGGACTCGACAGCTCCGTCTCAGCCCTCGGCAGCGCCTCCAGAGGAGGACGCGTTAAAGAGGAATACCGATTGCGTTTATTTCTTGGCGTCGCCTCTCACCTGCAAGAAGGGAAGTGAATGTGAGTATCGCCATAGTGAACATGCCCGGATGAACCCTAGGGATTGCTGGTTCTGGTTGAATGGTAATTGCTTGAATCCAAAGTGTTCGTTCCGGCATCCGCCTCTTGATGGCTTGTTGGGAACCCAAGCTACAACTCCTTCAGGATCTTCTATTCCTACATCTCAGTCCGTGGCACCACCTGCACCTCATGTTCCTGCACCTCATGTTCCTGCACCTCATGTTCCTGCTCCTCATGTTCCTGCATCTCATGTTCCTGCACCTCATGTTCCTGCATCTCATGTTCCTGCACCTCATGTTCCTGCACCTCATGTTCCTTATAGCTCTTCGGGTAAACAATCAGTCCCCTGCATTTTCTTCCAGAAGGGACTGTGCTTAAAAGGTGACAGATGTGCCTTTTTGCACGGACCAAATCCTACTGGTAACAAAATCCCACAAGCGCCAGCAGCTACTCCTGGCACTGAGCCTCCGTCTCTTAAGAAGGTGTTTGGTGGCCTTGAAAAGTGTACTCAAGAGCAGAGGGTTCTGCAGCCAAACTTCTCAAAGTCGTTTGAAGTGCCTCGTCCAGCAAAACCAGCTACAAAAACTGAAACTGCTCCACCAAAACACGCAGTTAGCATTGACAAAACTGCAGTGCCACCTGCAGGCTTGCGTGATGAGCTACCTAGGTACAAAGCAACTGATGTGCCTCCTGCCAGCAATGGAAACAGTGCGAATAGGTCCAATCGGATGCATCAGTCTGATGTATCAGATGATCACAGTTTTCAGAATGGTGGTAAGGATGTTGATGAGTTTTATAGAGAGTCCTCTCCTGGTTTTGATGTCCTTGTTGATGATGATCTCAGAGATTCTGATTACTATCATGATGAAGATCAGTTTGGAGGTGATGGAAGGAATTTGAATTCTATGAATGAATTTGACATTGGCCGATCTTCTGATTACAATTCAATGGCTGATATGGACCGAGAAATGTTCCGTGATCCACATGGCTATGACTCCTATGAGCACATGCATGGGCAGTATCCTTGGGATCATCGCAGGTCTTCATCAGAGAGGATGCTAGTGGGGGCAGCTCCTCTGGAAAGGAGGGGTTACCGTAAATCTGAGAGCCCTGATCAAATCAATGAATCAGATTTGCGACATCGCTTATCAAAGCACAGGAGAGTTAATGGTTTAAGATCAGTTGTTAGTCATGACTATGACCTAGACAATCATGCTGAAGAGAGGAGTCATCGTGGTCCGTCTCGAAGGGATTCACACCATGTACCTACACATGAGAGCTCCCTTAGCAGTCGCCTTCGGGGCAGAATAAAGCTTCCCAGGAGATCTTCTCCTGTCAATGGTAGTGACTTGCGTGTTGAAAAGGATCTGGACAGGGGAAGGAACTGGGGCAGATTGTCACCTGGAAGGCAACAAATTTCCTCCCAGCAGGGAAGGCTTCGAGACAGAATAAGAGGAAGGGTTCAAGAGGATTCCATTACTGATGCAAGAAATTCTTGGAACCAGCGCATCAGAAGGGATATAGTGGATGATGGCGTTGCTGATTTTGCTGGTCCAAAGAGCCTTGCAGAGCTGAAAGTTGTGAAGAATACGGAGAGCAAGGAGCAGCGAATGAAGGTTCAACAATCATTGTCCCTTGGAAGGCAGAGAAACTTAAAGATAGAGGGTCAGCAACAATCTGAAGATGACCTATCGTTTGAAGGGCCGAAGCCTCTTAGTGTGATTCTGAAGAGAAAAAGGGGAGCTGAAACAGCAGTTTCTGGGAGTGGAATGGTGCATGGAAATAAAGAAGAAAATGATCCAGAAGGCAAGGATGGTTTCATGAGCAGCTCCAAGACTACAGAAGTTGATGTAGTTGGAAGTGTAGAAGATGGTTTGATCCTAACAGAAAAAGATCAAGCAGCTGATAATGAGTCTTCTCAAGTGCCCAGCATGAATGAGCTTGAAACTGAAGATGGGGTGATTGGTGATGGAGTAACAGAAGATCAAGATCATGAGCTTGAAGGCTTTGATCAAAGGGATGGAGATGGAGATGGAGACGGAGAGTATGAATATGAGCAGGGTGACGAGGCAGAGTATAATTTAGAAGAGGGTGAAAATGTGGACCCTGAAGAGGAATACATGGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGGGTCATGTTCTCGTAA 2313 0.47 MVAATKDSTAPSQPSAAPPEEDALKRNTDCVYFLASPLTCKKGSECEYRHSEHARMNPRDCWFWLNGNCLNPKCSFRHPPLDGLLGTQATTPSGSSIPTSQSVAPPAPHVPAPHVPAPHVPAPHVPASHVPAPHVPASHVPAPHVPAPHVPYSSSGKQSVPCIFFQKGLCLKGDRCAFLHGPNPTGNKIPQAPAATPGTEPPSLKKVFGGLEKCTQEQRVLQPNFSKSFEVPRPAKPATKTETAPPKHAVSIDKTAVPPAGLRDELPRYKATDVPPASNGNSANRSNRMHQSDVSDDHSFQNGGKDVDEFYRESSPGFDVLVDDDLRDSDYYHDEDQFGGDGRNLNSMNEFDIGRSSDYNSMADMDREMFRDPHGYDSYEHMHGQYPWDHRRSSSERMLVGAAPLERRGYRKSESPDQINESDLRHRLSKHRRVNGLRSVVSHDYDLDNHAEERSHRGPSRRDSHHVPTHESSLSSRLRGRIKLPRRSSPVNGSDLRVEKDLDRGRNWGRLSPGRQQISSQQGRLRDRIRGRVQEDSITDARNSWNQRIRRDIVDDGVADFAGPKSLAELKVVKNTESKEQRMKVQQSLSLGRQRNLKIEGQQQSEDDLSFEGPKPLSVILKRKRGAETAVSGSGMVHGNKEENDPEGKDGFMSSSKTTEVDVVGSVEDGLILTEKDQAADNESSQVPSMNELETEDGVIGDGVTEDQDHELEGFDQRDGDGDGDGEYEYEQGDEAEYNLEEGENVDPEEEYMDDEDGDDFAKKIGVMFS* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1261 770 MobiDBLite consensus disorder prediction 1 15 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 407 428 - -
Vvi1g1261 770 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 20 770 - -
Vvi1g1261 770 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Vvi1g1261 770 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Vvi1g1261 770 SMART c3hfinal6 157 182 IPR000571 GO:0046872
Vvi1g1261 770 MobiDBLite consensus disorder prediction 437 472 - -
Vvi1g1261 770 Pfam Zinc-finger containing family 25 79 IPR041686 -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 628 758 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 493 508 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 290 312 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 220 312 - -
Vvi1g1261 770 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Vvi1g1261 770 MobiDBLite consensus disorder prediction 86 118 - -
Vvi1g1261 770 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 182 IPR000571 GO:0046872
Vvi1g1261 770 MobiDBLite consensus disorder prediction 703 721 - -
Vvi1g1261 770 Gene3D - 18 81 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 275 289 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 104 118 - -
Vvi1g1261 770 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Vvi1g1261 770 MobiDBLite consensus disorder prediction 86 103 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 678 692 - -
Vvi1g1261 770 SUPERFAMILY CCCH zinc finger 157 181 IPR036855 GO:0046872
Vvi1g1261 770 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Vvi1g1261 770 ProSiteProfiles Zinc finger C3H1-type profile. 156 183 IPR000571 GO:0046872
Vvi1g1261 770 Gene3D - 152 224 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 722 757 - -
Vvi1g1261 770 MobiDBLite consensus disorder prediction 403 528 - -
Vvi1g1261 770 FunFam Uncharacterized protein 152 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1261 Vvi-Chr1 18179613 18183696 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi1g1261 zf-CCCH_3 1.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1261 - - vvi:104880250 1414.82