Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1256 ATGGAAGAGCCTTCATCAGATTTTCCCCTTTTTATAAAGAGAAATGTGAGTGGGAGAGGACTGCAGTATAATCAAGTTGGGAGCCTTCCTCCAACTCTGGACCTGAGTAATAACCATCTCACTGGGACAATCTGGCCGGAGTTTGGGAATCTGAAAAAGCTCAATGTTTTTGAATTGAAATGTAACAATTTTTCAGGAACCATTCCCAGTAGTTTATCAGGGATGACAAGCGTGGAGACTATGGATTTGTCCCATAACAATCTTTCGGGCACAATACCTGACTCACTGGTAGAGCTCAGCTTCCTGTCAAAGTTCAGTGTTGCATACAATCAACTCACTGGGAAAATCCCTTCAGGAGGCCAGTTTCAGACTTTCTCGAATTCAAGCTTTGAGGGAAATGCTGGTCTTTGTGGTGACCATGCTTCCCCTTGTCCATCTGATGATGCTGATGATCAAGTTCCTCTTGGATCCCCCCACGGCTCTAAGAGAAGCAAAGGTGTTATCATTGGAATGTCTGTCGGAATTGGATTTGGGACAACTTTTCTTCTAGCTCTTATGTGCTTGATTGTTTTGCGGACAACTCGCAGAGGAGAGGTTGATCCTGAAAAAGAGGAGGCTGATGCCAATGATAAAGAGTTGGAACAACTCGGATCGAGGAAGGTTGCAATCAAAAGGTTATCTGGTGATTGTGGTCAGATGGAGAGAGAATTTCAAGCTGAAGTTGAAGCCCTCTCAAGAGCTCAACATCCGAATCTTGTCCTCCTTCAAGGGTATTGTAAATACAAGAATGACAGGCTTCTAATTTATTCATACATGGAGAACAGCAGCTTGGATTACTGGCTACATGAGAAACTGGATGGACCATCCTCATTAGATTGGGATACAAGGCTTCAAATTGCTCAAGGGGCTGCAATGGGACTTGCATACTTGCATCAGTCATGTGAGCCCCATATCCTTCACCGAGATATTAAGTCCAGTAACATCCTTTTAGATGAGAAGTTTGAAGCCCACTTGGCTGATTTTGGTCTTGCAAGGCTCATTCTCCCCTATGACACCCATGTCACTACTGATCTCGTTGGAACACTAGGCTATATCCCACCTGAGTATGGCCAAGCTTCTGTTGCCACTTATAAGGGAGATGTTTACAGTTTTGGAGTTGTTCTTTTGGAGCTTCTTACTGGAAAGAGGCCAATGGATATGTGCAAACCAAGAGGATGTCGAGATTTGATCTCTTGGGTCATTCAGATGAAGAAGGAGAAGAGGGAAAGTGAGGTTTTCGATCCATTCATATATGACAAGCAGCATGACAAGGAACTGTTGCGGGTTCTTGACATTGCTTGCCTTTGCTTAAGCGAGTGCCCTAAAATCAGACCTTCGACCGAACAGCTAGTTTCTTGGCTCAACAACATTCTTATGTAA 1419 0.439 MEEPSSDFPLFIKRNVSGRGLQYNQVGSLPPTLDLSNNHLTGTIWPEFGNLKKLNVFELKCNNFSGTIPSSLSGMTSVETMDLSHNNLSGTIPDSLVELSFLSKFSVAYNQLTGKIPSGGQFQTFSNSSFEGNAGLCGDHASPCPSDDADDQVPLGSPHGSKRSKGVIIGMSVGIGFGTTFLLALMCLIVLRTTRRGEVDPEKEEADANDKELEQLGSRKVAIKRLSGDCGQMEREFQAEVEALSRAQHPNLVLLQGYCKYKNDRLLIYSYMENSSLDYWLHEKLDGPSSLDWDTRLQIAQGAAMGLAYLHQSCEPHILHRDIKSSNILLDEKFEAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDMCKPRGCRDLISWVIQMKKEKRESEVFDPFIYDKQHDKELLRVLDIACLCLSECPKIRPSTEQLVSWLNNILM* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1256 472 Pfam Leucine rich repeat 32 88 IPR001611 GO:0005515
Vvi1g1256 472 FunFam Leucine-rich repeat receptor-like protein kinase 272 472 - -
Vvi1g1256 472 Gene3D Phosphorylase Kinase; domain 1 211 272 - -
Vvi1g1256 472 MobiDBLite consensus disorder prediction 141 161 - -
Vvi1g1256 472 ProSiteProfiles Protein kinase domain profile. 167 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1256 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Vvi1g1256 472 Pfam Protein kinase domain 217 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1256 472 Gene3D Transferase(Phosphotransferase) domain 1 273 472 - -
Vvi1g1256 472 SUPERFAMILY Protein kinase-like (PK-like) 217 467 IPR011009 -
Vvi1g1256 472 Gene3D Ribonuclease Inhibitor 8 153 IPR032675 -
Vvi1g1256 472 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 144 - -
Vvi1g1256 472 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 32 470 - -
Vvi1g1256 472 SMART serkin_6 210 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1256 472 SUPERFAMILY L domain-like 9 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1256 Vvi-Chr1 18076720 18078285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1256 33 97 Receptor kinase-like Gene Family AT1G55610 41.538 3.04e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi1g1256 Pkinase 4.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1256 - - vvi:100254716 937.562