Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1252 ATGGCAAGGTACTCGTTTTTGTTGTTTTTGTTCTCTTTGATGCACCTTCAACCTCTGGTGAGATCAGGCGATGGTGAAACGCTTCTAGCCCTAAAATCGTGGATCGATCCTTCGAACTCGCTGCAATGGAGAGGAAGCGACTTCTGCAAATGGCAAGGAGTGAAGGAATGTATGAGAGGCAGAGTCACCAAGCTTGTTCTCGAGCATTTGAACTTGAATGGAACTTTGGATGAGAAGAGCCTGGCACAGTTGGATCAGCTTCGAGTGCTCAGCTTCAAAGAGAACTCTCTTTCCGGCCAAATCCCCGACCTCTCCGGCCTAATCAACCTAAAATCCCTCTTCCTCAATAATAACAACTTCTCCGGCGACTTCCCTAGCTCCCTCTCCGGCCTGCACCGCCTCAAAGTGATCATCCTCGCAGGAAACCAAATATCCGGCCAGATTCCAGCGAGTCTACTCAAGCTGCAGCGACTGTACATTCTGTACTTGCAAGACAACCGCCTTACCGGAGAAATCCCTCCCCTCAACCAAACTAGCCTCCGGTTCTTCAATGTGTCTAACAACCAACTCTCCGGCGAGATTCCCCTGACTCCCGCTGTGGTTCGATTCAATCAATCATCATTCTCCAATAACCTAGAACTATGCGGCGAACAAGTTAATAGTCCATGCCCCCGCTCGCCTGCAATCAGTCCGGAGTCTCCAACAGTGCCAACCCCAAGCTCATCCTCCAAACATTCGAACCGCACAAAACGCATAAAGATAATCGCAGGAAGCGTCGGTGGAGGTGTGCTTCTAATCTGTTTGATTCTGCTCTGCGTGAGTTATAGGAGGATGAGGAGGAAGACGGTGGAGGGGAGGAGCAAAGGAAAGGCCGTCGGCGCCGTCGGATCGCCGGAAGCAGCGAACGGCGGTGGCGGCGGAGGAGGCGGGAACAATGAGAGAAAGCAAGGGGGGTTTTCGTGGGAAGGAGAGGGACTTGGGAGTCTGGTGTTCTGCGGGCCAGGGGATCAGCAGATGAGTTACAGTTTGGAGGATTTGTTGAAGGCGTCGGCGGAGACGCTGGGGAGGGGGACGATGGGAAGCACGTACAAGGCGGTGATGGAGTCTGGGTTTATAGTGACCGTGAAGAGGCTCAAGGACGCCAGATACCCCCGGCTGGAGGAGTTCAGGGCACAGATGGAGCTTCTAGGGAGGCTGAGGCACCCCAATTTGGTGCCTCTCCGTGCCTACTTCCAGGCCAAGGAGGAACGCCTCCTCGTATACGATTACTTCCCCAACGGCAGTCTCTTCTCCCTCATTCATGGATCAAGAACTTCAGGTGGTGGAAAGCCTCTTCACTGGACATCCTGCCTAAAAATTGGAGAGGACTTGGCTACTGGGTTGCTCTATATCCACCAGAACCCTGGCCTAACCCATGGGAACTTGAAATCATCCAATGTCCTGTTAGGATCTGACTTTGAGTCATGCCTCACAGATTATGGTCTCACCACATTCAGAGACCCAGACACTGTAGAAGAGTCCAGTGCTTCTTCCCTTTTCTATAGAGCACCTGAATGTCGAGATACCAGAAATCCGTCCACCCAACAGGCTGATGTCTACAGCTTTGGTGTAATCCTATTGGAGCTCCTAACAGGTAAAACTCCCTTCCAAGACCTTGTTCAAGAACATGGTTCAGACATTCCTAGATGGGTCCGTTCAGTTCGTGAAGAAGAGACTGAATCTGGAGATGACCCAGCCTCTGGCAATGAGACCTCTGAGGAGAAACTTGGAGCTCTCTTGAACATTGCAATGGCTTGTGTCTCACTATCACCCGAGAACCGGCCAGTGATGAGGGAGGTTTTAAGGATGATTAAGGAAACAAGGGCAGAGGCTCAAGTGTCATCAAACAGCAGTGACCACTCACCAGGGAGATGGTCTGATACAGTTCAGAGCTTGCCCAGGGAAGAACATTTGAGCATATGA 1962 0.5153 MARYSFLLFLFSLMHLQPLVRSGDGETLLALKSWIDPSNSLQWRGSDFCKWQGVKECMRGRVTKLVLEHLNLNGTLDEKSLAQLDQLRVLSFKENSLSGQIPDLSGLINLKSLFLNNNNFSGDFPSSLSGLHRLKVIILAGNQISGQIPASLLKLQRLYILYLQDNRLTGEIPPLNQTSLRFFNVSNNQLSGEIPLTPAVVRFNQSSFSNNLELCGEQVNSPCPRSPAISPESPTVPTPSSSSKHSNRTKRIKIIAGSVGGGVLLICLILLCVSYRRMRRKTVEGRSKGKAVGAVGSPEAANGGGGGGGGNNERKQGGFSWEGEGLGSLVFCGPGDQQMSYSLEDLLKASAETLGRGTMGSTYKAVMESGFIVTVKRLKDARYPRLEEFRAQMELLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIGEDLATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTTFRDPDTVEESSASSLFYRAPECRDTRNPSTQQADVYSFGVILLELLTGKTPFQDLVQEHGSDIPRWVRSVREEETESGDDPASGNETSEEKLGALLNIAMACVSLSPENRPVMREVLRMIKETRAEAQVSSNSSDHSPGRWSDTVQSLPREEHLSI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1252 653 MobiDBLite consensus disorder prediction 289 317 - -
Vvi1g1252 653 Gene3D Ribonuclease Inhibitor 176 226 IPR032675 -
Vvi1g1252 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 624 IPR046959 -
Vvi1g1252 653 Gene3D Ribonuclease Inhibitor 22 175 IPR032675 -
Vvi1g1252 653 Pfam Protein kinase domain 351 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1252 653 Gene3D Phosphorylase Kinase; domain 1 334 423 - -
Vvi1g1252 653 ProSiteProfiles Protein kinase domain profile. 348 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1252 653 SUPERFAMILY L domain-like 35 197 - -
Vvi1g1252 653 Gene3D Transferase(Phosphotransferase) domain 1 424 641 - -
Vvi1g1252 653 MobiDBLite consensus disorder prediction 563 584 - -
Vvi1g1252 653 MobiDBLite consensus disorder prediction 223 248 - -
Vvi1g1252 653 SUPERFAMILY Protein kinase-like (PK-like) 352 628 IPR011009 -
Vvi1g1252 653 MobiDBLite consensus disorder prediction 622 653 - -
Vvi1g1252 653 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Vvi1g1252 653 FunFam Nuclear pore complex protein NUP107 21 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1252 Vvi-Chr1 17985735 17994297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1252 6 653 Receptor kinase-like Gene Family AT1G60630 63.817 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi1g1252 Pkinase 1.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1252 - - vvi:100855399 1223.38