Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1241 ATGGCTACTATAAGAAAGAGTAAGGGTCGCCAAAGGGTTGAGATGACTAAAATGGCAAAAGAAAGTAACCTACAGGTTACCTTTTCCAAACGTCGGTCTGGCCTTTTCAAGAAAGCTAGTGAATTGAGCACCCTTTGTGGCGCCGAAACTGCCATTATAGTCTTCTCTCCAGGTAAAAAAGTATATTCATTTGGCCATCCATCTGTCGAATCCATCGTAGATCGGTTCCTTACACGGAATCCTCTTACAAATGCTGGTACACTACAACTTTTCGAGGCTCATCGGGCCTCAAATACTACCAACACCAATTAA 312 0.4295 MATIRKSKGRQRVEMTKMAKESNLQVTFSKRRSGLFKKASELSTLCGAETAIIVFSPGKKVYSFGHPSVESIVDRFLTRNPLTNAGTLQLFEAHRASNTTNTN* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1241 103 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vvi1g1241 103 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Vvi1g1241 103 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Vvi1g1241 103 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 PANTHER MADS BOX PROTEIN 10 87 - -
Vvi1g1241 103 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Vvi1g1241 103 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1241 Vvi-Chr1 17760880 17762318 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1241 4 103 Type I MADS-box Gene Family AT5G60440 64.706 2.56e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi1g1241 SRF-TF 4.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1241 - - vvi:100263343 191.43