Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1239 ATGCACTTTATAACTGTTGATCTGCATGATGCTAAGGAGTCTCGTAAGCGATTTGACAAAGCTATACATGCTTATGATCAGTCACGTGAGAAGTTTGTGTCTTTGAAGAAGGGTACACGCGAAGACATTGTGGCTGAACTAGAAGAGGATCTACAGAACTCAAAGTCATCATTTGAGAGAAGCCGCTTTAATTTAGTAAATTCCCTTGTGAAAATTGAAGCAAAAAAGAAATATGAATTTTTGGAATCTTTTAGTGCTATTATGGATGCTCATCTGAGATATTTTAAGCTGGGATATGACTTGTTGAGTCAGCTGGAGCCATTTATTCACCAGGTATTGACATATGCACAACAATCGAAAGAACTAGCCAACATTGAACAAGATAAACTTGCAAAAAGAATTCAAGCATTCAGGACACAAACAGAGTTGGAGAGTCTAAAAGCTTCCACTAACATGGAGGCCTCAAGACATGCTAGTGGCATTCATGCTGTTGGTATGAGTTCTTACAAAAACATAGAAGCAATTATGCAATCCACTACAAAAGGGGAGGTGCAAACGATAAAGCAAGGCTATCTCTTAAAACGTTCTTCAAGTTTGAGAGGAGATTGGAAAAGGAGGTTCTTTGTACTTGACAGCCAGGGGACTTTATATTATTATAGAAATAAGGGTACGAAATCCATGGGATCTCAACCAAACTATTCAGCTGGTTCAATGGAACATAATAGCAGCATGTTCAGTAGATTCCGCTCAAAGCACAATAAAGCATCATTACTCAATGAAGAAAACTTGGGTTGTCATACTGTTGATCTCCGTACTTCAACAATAAAGATTGATGCAGAAGATTCAGATCTGCGGCTTTGCTTCAGAATAATATCTCCAGCAAAAACTTATACATTGCAGGCTGAAAATGGAGCAGACAGAATGGACTGGATAAACAAAATAACAGGGGTTATTGCATCCCTTTTAAATTCTCACATTCTGCAACAGCCGCACCCTGGAACAAAGCTTCTAGACAATAATGACTCTGCCATTAGTGCTTATGACGTTCGATCATTAAATGGTCTTCCTGAGGATGATCTGAAAGTCAATCAAGCTGATAATGTTTCTAAAGTTCTCAGAGAAATTCCTGGAAATGATCTGTGTGCAGAATGCAGTGCTCCTGAACCTGATTGGGCATCTTTAAATCTTGGCATTTTGTTGTGCATTGAGTGCTCTGGTGTTCATCGGAATCTTGGTGTTCATGTTTCAAAGGTAAGATCTATCACATTAGATGTCAAGGTTTGGGAACCTCCCATCTTGGATCTGTTTCGCACTCTTGGAAATACGTATTGTAACTCTATCTGGGAGGAACTACTACTACTTCAGAAGGAAAGATTAGGTGAATCAAATGTTTTCTCCTCAACAGTTATGAAGCCATGCCCCAAAGATGCAATTCACCAAAAGGAAAAATATATTCAAGCAAAGTATGTAGAGAAACATCTTGTCAGCAAAGAAGCAACTGTAGCTGACATTCCTTCTGCCAATAGCATCTGGGAGGCTGTTAAGAGTAATAATTTGAGAGAAGTATATCGCCTTATAGTGAAATCAGATGTGAGTATCATCAACACCACCTATGATGAGTTGGTTGGTGTTAATTTACATCACACCATTGATGCACAAGAGTCAGAGGTTGGTTGTCACTCAGTAGAAAGGAAGCAGTATGATCCAAGTGTCTGTCAGAGGATTAAGGATTCCAGCTCTCCAGCTAATTGTCTTCAAGGTTGTTCATTATTGCATCTAGCATGTCATTTGGGCAATCAAGTGATGGTGGAGCTGTTGTTGCAATTTGGTGCTGACATAAACATGCGAGACTTTCATGGAAGGACTCCTCTGCACCATTGCATTTCCAGAGGGAACAATAAATTGGCAAAGTTTCTACTTAGAAGAGGTGTCCGTCCTTCAATCAAAGATGGTGGAGATCTAAGTGCATTGGAAAGAGCAATGGAGTTGGGAGCCATAACTGACGAGGAGCTATTTATTTTGCTTGCCGAAGGCCAATGA 2040 0.3966 MHFITVDLHDAKESRKRFDKAIHAYDQSREKFVSLKKGTREDIVAELEEDLQNSKSSFERSRFNLVNSLVKIEAKKKYEFLESFSAIMDAHLRYFKLGYDLLSQLEPFIHQVLTYAQQSKELANIEQDKLAKRIQAFRTQTELESLKASTNMEASRHASGIHAVGMSSYKNIEAIMQSTTKGEVQTIKQGYLLKRSSSLRGDWKRRFFVLDSQGTLYYYRNKGTKSMGSQPNYSAGSMEHNSSMFSRFRSKHNKASLLNEENLGCHTVDLRTSTIKIDAEDSDLRLCFRIISPAKTYTLQAENGADRMDWINKITGVIASLLNSHILQQPHPGTKLLDNNDSAISAYDVRSLNGLPEDDLKVNQADNVSKVLREIPGNDLCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVKVWEPPILDLFRTLGNTYCNSIWEELLLLQKERLGESNVFSSTVMKPCPKDAIHQKEKYIQAKYVEKHLVSKEATVADIPSANSIWEAVKSNNLREVYRLIVKSDVSIINTTYDELVGVNLHHTIDAQESEVGCHSVERKQYDPSVCQRIKDSSSPANCLQGCSLLHLACHLGNQVMVELLLQFGADINMRDFHGRTPLHHCISRGNNKLAKFLLRRGVRPSIKDGGDLSALERAMELGAITDEELFILLAEGQ* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1239 679 SMART arf_gap_3 366 502 IPR001164 GO:0005096
Vvi1g1239 679 Pfam PH domain 187 318 IPR001849 -
Vvi1g1239 679 SMART PH_update 186 321 IPR001849 -
Vvi1g1239 679 ProSiteProfiles Ankyrin repeat profile. 619 651 IPR002110 GO:0005515
Vvi1g1239 679 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 353 503 - -
Vvi1g1239 679 Gene3D Arfaptin homology (AH) domain/BAR domain 1 144 IPR027267 -
Vvi1g1239 679 SUPERFAMILY Ankyrin repeat 509 665 IPR036770 -
Vvi1g1239 679 Gene3D - 503 667 IPR036770 -
Vvi1g1239 679 CDD PH_ACAP 188 323 - -
Vvi1g1239 679 Pfam BAR domain of APPL family 2 121 IPR004148 GO:0005515|GO:0005737
Vvi1g1239 679 ProSiteProfiles ARF GTPase-activating proteins domain profile. 366 502 IPR001164 GO:0005096
Vvi1g1239 679 ProSiteProfiles Ankyrin repeat region circular profile. 586 617 - -
Vvi1g1239 679 Gene3D Arf GTPase activating protein 354 502 IPR038508 -
Vvi1g1239 679 ProSiteProfiles Ankyrin repeat region circular profile. 619 650 - -
Vvi1g1239 679 PANTHER CENTAURIN/ARF 2 677 IPR045258 GO:0005096
Vvi1g1239 679 Pfam Ankyrin repeats (3 copies) 570 650 IPR002110 GO:0005515
Vvi1g1239 679 SUPERFAMILY ArfGap/RecO-like zinc finger 367 495 IPR037278 -
Vvi1g1239 679 SMART ANK_2a 586 615 IPR002110 GO:0005515
Vvi1g1239 679 SMART ANK_2a 619 648 IPR002110 GO:0005515
Vvi1g1239 679 SUPERFAMILY PH domain-like 186 330 - -
Vvi1g1239 679 Pfam Putative GTPase activating protein for Arf 368 497 IPR001164 GO:0005096
Vvi1g1239 679 ProSiteProfiles PH domain profile. 185 319 IPR001849 -
Vvi1g1239 679 CDD ArfGap 370 489 - -
Vvi1g1239 679 PRINTS HIV Rev interacting protein signature 397 414 IPR001164 GO:0005096
Vvi1g1239 679 PRINTS HIV Rev interacting protein signature 420 441 IPR001164 GO:0005096
Vvi1g1239 679 PRINTS HIV Rev interacting protein signature 378 397 IPR001164 GO:0005096
Vvi1g1239 679 SUPERFAMILY BAR/IMD domain-like 2 208 IPR027267 -
Vvi1g1239 679 Gene3D - 177 330 IPR011993 -
Vvi1g1239 679 ProSiteProfiles Ankyrin repeat profile. 586 618 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1239 Vvi-Chr1 17604978 17669289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1239 366 493 C2H2 Transcription Factor Family AT3G07940 41.085 1.08e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1239 K12489 - vvi:100261572 1352.04