Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1235 ATGGTTTTGCAGTCTACTTCTGCGAGCTTCCATTTCTCGCAGATTTTCAATGCTTGCTCCTGTGAAACCACTCCGTGGAATTTGAATTTCCCACCCATTGTTTTCTCCAAGAAAAGGAAGAGATTTTGCCGAAGGAAAAGGGTTTTTCTGGCTTGTGCGATTCCCTCTGACCGCCGACGCGGGAATTTCAATGTCCAATTGGCCAGTTCCACCAGCCGTGGAGCGAAAATCTTTGTGGTAAATCGATTCTCCGAGGAATTCAATGATGGGGAAGGGTCCCAAGAATCCTCAGTTCAAATGGGTTCACAATTCACCAACTTCCAAGAAGACCCAATTGTGGATAAGCTCAGGACTCAACTGGGTGTGATCCACCCCATCCCTTCGCCTCCCATTAATCGCAACATTGTTGGATTATTTGGGTTCTTTTTCTTGATTGGAGTAGTTTTCGATAAGGTATGGACATCGGGGAAGAAGAAGAAATCGAACATTGAGCAGGGGCGGTCCGGGATTTGGCCACAGGTGCCCACCAGTTTTTCCTTGCTTTTGGAAAAGGATTTGCAGAGGAAGGAGTCAGTAGAATGGGTGAACATGGTTTTGGGGAAGTTGTGGAAGGTGTACCGAGGTGGGATTGAGAATTGGCTCATTGGGTTGCTTCAGCCCGTCATTGACAATCTGAAGAAACCCGATTACGTGCAAAGAGTTGAAATTAAGCAGTTCTCCTTAGGGGATGAGCCGTTGTCAGTTAGGAATGTCGAGCGCAGAACTTCTCGTCGGGCCAATGATTTGCAGTATCAAATAGGCCTCCGTTATACAGGTGGGGCTCGAATGCTGTTAATGCTGTCACTTAAATTCAGCATCATCCCCATTGTTGTGCCAGTTGGTGTTCGTGATTTTGACATTGATGGGGAACTTTGGGTTAAATTGCGGTTGATTCCAACAGAGCCTTGGGTTGGAGCTGTTTCATGGGCTTTTGTTTCGCTTCCAAAAATAAAAGTTGAATTGTCACCATTTCGCTTGTTCAATCTAATGGCAATTCCTGTTCTTTCAATGTTTTTGAAAAAACTTCTCACTGAGGATTTGCCTCGACTTTTTGTACGTCCTAAGAAGACCGTTTTAGATTTCCAAAAAGGAAAAGCAGTTGGTCCTGTTGAAAATGCTTTAACGGGAGAAATGCAAGAAGGAAACAGGGACTTTGTTGGAGAACTATCGGTGACACTTGTAGATGCGCGGAAGCTCTCTTATGTTTTCTATGGTAAAACGGATCCTTACGTCACTCTAAGCATAGGAGATCAGAAAATACGTAGTAAAAAGAACAGTCAGACCACTGTCATTGGGCCTCCTGGTGAGCCAATTTGGAATCAGGATTTTCATATGCTTGTTGCAAATCCTAGAAAACAGAAATTACTAATCCAAGTGAAGGATTCTCTTGGATTTGCAGACCTGACAATTGGCACGGGAGAGGTTGATCTGGGATCTCTTAAAGATACTGTACCAACAGACAGGATAGTGGTCTTGCAAGGAGGCTGGGGTCTATTTAGGAGAGGTTCTTCTGGGGAAATATTACTTCGACTGACATATAAGGCATATGTTGAGGATGAAGAAGATGACAAGACAGAGGCAGAATCCATGGATACAGATGTTTCGGATGACGAGATGTCCGATTCTGAGGAAGTAGATGCTACCTTTGAGCAGAGTCAAAGGGGAACCTTGAATGGAACAGATAAAGAATCATTTATGGATCTTCTAGCAGCTTTGATTGTGAGTGAGGAATTTCAAGGGATTGTGGCATCTGAAACGGGAAGTATGCAACCTTCTGATGATGTTCCAAGTTTGGACCCAACAATATTAAGATCGATTGGCGTTACTTCTGAACTTAAACCTTCTAATCCAAATAGTGATTCTGAAATTTCTGGAGGAACAACATTATTATGGCTTTCTGTGATCACAAGTACTGCTGTGCTAATTGCCCTCTCCATGGGGGGTTCAAGTTTATTCAATCCCTAA 2004 0.4361 MVLQSTSASFHFSQIFNACSCETTPWNLNFPPIVFSKKRKRFCRRKRVFLACAIPSDRRRGNFNVQLASSTSRGAKIFVVNRFSEEFNDGEGSQESSVQMGSQFTNFQEDPIVDKLRTQLGVIHPIPSPPINRNIVGLFGFFFLIGVVFDKVWTSGKKKKSNIEQGRSGIWPQVPTSFSLLLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWLIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRANDLQYQIGLRYTGGARMLLMLSLKFSIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKVELSPFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKTVLDFQKGKAVGPVENALTGEMQEGNRDFVGELSVTLVDARKLSYVFYGKTDPYVTLSIGDQKIRSKKNSQTTVIGPPGEPIWNQDFHMLVANPRKQKLLIQVKDSLGFADLTIGTGEVDLGSLKDTVPTDRIVVLQGGWGLFRRGSSGEILLRLTYKAYVEDEEDDKTEAESMDTDVSDDEMSDSEEVDATFEQSQRGTLNGTDKESFMDLLAALIVSEEFQGIVASETGSMQPSDDVPSLDPTILRSIGVTSELKPSNPNSDSEISGGTTLLWLSVITSTAVLIALSMGGSSLFNP* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1235 667 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 40 667 - -
Vvi1g1235 667 ProSiteProfiles C2 domain profile. 381 503 IPR000008 -
Vvi1g1235 667 MobiDBLite consensus disorder prediction 533 573 - -
Vvi1g1235 667 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 400 528 IPR035892 -
Vvi1g1235 667 SMART C2_3c 401 502 IPR000008 -
Vvi1g1235 667 CDD SMP_SF 210 373 - -
Vvi1g1235 667 Gene3D C2 domain 390 529 IPR035892 -
Vvi1g1235 667 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 188 375 IPR031468 GO:0008289
Vvi1g1235 667 MobiDBLite consensus disorder prediction 534 558 - -
Vvi1g1235 667 Pfam C2 domain 400 496 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1235 Vvi-Chr1 17455712 17470659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1235 392 493 C2H2 Transcription Factor Family AT4G05330 34.951 2.46e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1235 - - vvi:100247873 1290.79