Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1218 ATGAGGCAGCCATTGGGTGAAAGTTTGGAAAGTTGGCGTGGTTTCGATCAGAGTATTCGGCCAACTCAGATGAGATTGTCATTGAAGGTTAACATGTCCTCGACTGCTTTTATTGAGCCCTTACCTGTCATTGATTTTGTGACGCAACTTCTGAATCGGGATGTTTCGTCTCGACCATTACCTGATCTGATAGTGTAA 198 0.4394 MRQPLGESLESWRGFDQSIRPTQMRLSLKVNMSSTAFIEPLPVIDFVTQLLNRDVSSRPLPDLIV* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1218 65 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 54 - -
Vvi1g1218 65 SUPERFAMILY PAZ domain 4 53 IPR036085 GO:0005515
Vvi1g1218 65 SMART DUF1785_2 4 40 IPR014811 -
Vvi1g1218 65 Pfam Argonaute linker 1 domain 2 39 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1218 Vvi-Chr1 17064321 17064518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1218 2 62 Eukaryotic Initiation Factors Gene Family AT1G48410 73.770 3.74e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1218 K11593 - egr:104425865 108.997