Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1216 ATGGTTGTGGCCATGATGATGCAGCAGACTTCCTCTGCACCGGCGTCGCAGCCGATCCCTCTCCCTTCCTCCACCTCCTCTCTTAGATCCCCCTCCGCTGCCCCCCTCCAGTCTCAACTCCCCTCCCCGCTCTCCCTTGGCCCCGCAGCCCCGCAGCCTCCTCCGCCGTCGTCTCACCGCCAGCTGCCCCCTTCCGCCGTAGCCGTCGACCATGTGGTGCCGATCGCCGCCGCGCACCCTTCCGGAGAGCCGGCGCTGACTATGGCAGTGCCGCTGGCGAGGGTCCGGCTCTGCGATATTGTGTCTTATGATGGTGCGCCGGCGGGGCCGTATGTTCGAGCGGTGGAGGCGCTGTCGGGGTCTCTGATGCGGCACAACGCCGCGGTGATCGAGCTCGGGAGCGAGGACGCCGCCTTGATGAGGTGCGGTTTGGAGTCGGCGAGGTTGTATTTCAAGGCTAGGGCTTTGAGTGTTGGCACCGGAGGAGGCAATTGGGGGAAGGGGAGTCGCGGTGTTTACATGTACAGGGCGGGAAGGGCTTTGGAAGATTCGGACTTGTCTCCTCCATGCATGGCTGAAGTTTTTAGATGCATGGGAAAAGCCGCTCGTGCTGCTCTGTGTGCTATTGCAAGATATCTTCGTTTGCGAAGCGATGTTTTCAATCCTCTGCTTGATGATACCCCATTGCCTATTAATGAGGCATCCTCATCAGTGCTTGTTGCAACCTACTCTCATGGGTCCTTGCAAAATGGCAAAGGAGCCATTGGGGGAGGGAAGCCAGCTATGAATGGTGAAGTTGAGAAGGGTTTGCTGACATTGATTTCTTCGGATAATCCTGGTCTTCAGGTTTGTGACCCCAATGGTCGTTGGTACCTGGCAGATGGTGGGTCAGCTCCTGGGGATCTTTTGCTGCTTACTGGGAAGGCGCTTAGCCATGCTACTGCTGGCCTTCGTCCTGCTGCCACCTATAGAGCTGCTTCTGATTACACTTCAGGCACTGCTAGTGGAAGGACATCACTAGCATTTAGGCTCATGCCGCAGGGCAATGCTATATTAGATTGTTCTCCAATTGCTGCTGCTGGTCATGTAATTCCACAGAGCTATGTACCAATCTCTGTAAGCCAATTTATGGATGACCTTTCTGCTGAGGAAGATGGACTGTGCAACCCTTCCGATAGCACTTATGTAGCTCGAAATAATTTTAATAGGGAACCATCATTAAGAAGTGTGCTGTCGGATCCCTTATCGGGTGCATTTCTTGAAGATGCAATGGTTGTTTCATGCGGGCACACTTTTGGTGGTCTCATGCTGAGAAAGGTCATTGAAATGTCAAGATGTACTCTTTGCAATGCAGAAATTGATACCAGTTCTTTGATCCCTAATCATGCTCTTAGAGCTGCAGCTGCTGCTGTAAAACATGAGGATGACCGGAGGCTTTTTCATAATGCTGCTCTCCGGAAGCGTCGGAAAGAAGTTGGTGATCAAACAGATTCAATAAGAAGATTAAACAGGGAAAATGGAGATATTAGTGCTGATGATGGGATGCACAGAGGTGTGCAGTATCCATTTTCAGTAAATGAGAAAGTGATAATTAAGGGAAATCGAAGGACACCGGATAAATTTGTTGGGAAGGAGGCTGTCATTACATCCCAGTGTTTGAATGGCTGGTACCTGCTTAAGATTATTGGAAGTGGGGAAAGTGTTCGCCTACAGTACCGTTCGTTAAGGAAGATCTTGAACTCCCATGCAGCTGAAGACAGATGTCCATCACAGCCAATTCAGAGCAGCAGCTGA 1794 0.5178 MVVAMMMQQTSSAPASQPIPLPSSTSSLRSPSAAPLQSQLPSPLSLGPAAPQPPPPSSHRQLPPSAVAVDHVVPIAAAHPSGEPALTMAVPLARVRLCDIVSYDGAPAGPYVRAVEALSGSLMRHNAAVIELGSEDAALMRCGLESARLYFKARALSVGTGGGNWGKGSRGVYMYRAGRALEDSDLSPPCMAEVFRCMGKAARAALCAIARYLRLRSDVFNPLLDDTPLPINEASSSVLVATYSHGSLQNGKGAIGGGKPAMNGEVEKGLLTLISSDNPGLQVCDPNGRWYLADGGSAPGDLLLLTGKALSHATAGLRPAATYRAASDYTSGTASGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNPSDSTYVARNNFNREPSLRSVLSDPLSGAFLEDAMVVSCGHTFGGLMLRKVIEMSRCTLCNAEIDTSSLIPNHALRAAAAAVKHEDDRRLFHNAALRKRRKEVGDQTDSIRRLNRENGDISADDGMHRGVQYPFSVNEKVIIKGNRRTPDKFVGKEAVITSQCLNGWYLLKIIGSGESVRLQYRSLRKILNSHAAEDRCPSQPIQSSS* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1216 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 477 IPR013083 -
Vvi1g1216 597 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 89 586 - -
Vvi1g1216 597 SUPERFAMILY RING/U-box 406 473 - -
Vvi1g1216 597 MobiDBLite consensus disorder prediction 1 64 - -
Vvi1g1216 597 MobiDBLite consensus disorder prediction 1 45 - -
Vvi1g1216 597 MobiDBLite consensus disorder prediction 46 61 - -
Vvi1g1216 597 Gene3D - 179 382 IPR027443 -
Vvi1g1216 597 SUPERFAMILY Clavaminate synthase-like 190 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1216 Vvi-Chr1 17020080 17056350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1216 407 577 Plant U-box Gene Family AT5G05230 42.105 3.27e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1216 - - vvi:100247878 1077.39