Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1200 ATGGCACCTTCTCTTCATTCAAGGCCTTTCCTTCTGCTATTCGTGCTTTTAAGTCTGTCCATTCTTTGCATGAGGAGCTTGGATGCAAGTGAGCCTTATTTGACATTAGATTACTATGCATCCTCATGTCCATCTGTGCTCGAGATCGTGAGGAAAGAAATGGAATGTGCAGTGCTCTCTGATCCTCGTAATGCAGCCTTCATATTGCGGTTGCATTTCCATGACTGCTTCGTTCAGGGATGTGATGGATCGGTTTTGCTGGACGACACAATTACACTGCAAGGAGAGAAGAAGGCTTCAATTAACATCAATTCCCTCGATGGTTTCAGACTGATTGATAGGATAAAAAACAAGCTTGAATCAGAGTGCCCAGGGATTGTATCCTGTGCAGATATTCTAACTGTTGCAGCAAGAGATGCTGTTATTCTGGTTGGTGGACCCTACTGGGATGTTCCTCTGGGAAGAAAAGATTCGACAACTGCAAACTATGATCTTGCTACAGCCAATCTTCCTGCTGCAAATGAAGACCTTTTAAGCATCATTTCTAAATTTCTTTATCAAGGCCTCTCAGTCACAGATGTGGTAGCTCTCTCAGGGGCTCACACTATTGGCATGGCACGGTGTGAGAATTTCCGAGCAAGGATCTATGGAGACTTCAAAGGAACTTCAGGGAATAATCCAGTTTCCAACACTTACCTCAGTAACTTGAAATCCATATGCCCAGCCACTGGTGGAGGAGAAGATAACACAGCTGGAATGGACTATGTCACTCCCAACTACTTCGACAATTCCTTTTATCATCTTCTTCTGAAAGGGGAGGGACTGCTGAACTCAGACCAGGAGCTGTACTCTAGCCTGTTTGGTATCCAAACAAAGGGGCTTGTGAAGAAGTACGCAGAGGATTCACTTGCTTTCTTCCAGCAGTTCTCGGATTCCATGGTGAAACTGGGAAACATCACAAATGCTGACAGCTTCAGTACTGGGGAGGTTAGGAAGAACTGCAGATTTGTGAATACATGA 1020 0.4461 MAPSLHSRPFLLLFVLLSLSILCMRSLDASEPYLTLDYYASSCPSVLEIVRKEMECAVLSDPRNAAFILRLHFHDCFVQGCDGSVLLDDTITLQGEKKASININSLDGFRLIDRIKNKLESECPGIVSCADILTVAARDAVILVGGPYWDVPLGRKDSTTANYDLATANLPAANEDLLSIISKFLYQGLSVTDVVALSGAHTIGMARCENFRARIYGDFKGTSGNNPVSNTYLSNLKSICPATGGGEDNTAGMDYVTPNYFDNSFYHLLLKGEGLLNSDQELYSSLFGIQTKGLVKKYAEDSLAFFQQFSDSMVKLGNITNADSFSTGEVRKNCRFVNT* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1200 339 PANTHER PEROXIDASE 72-RELATED 33 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Haem peroxidase superfamily signature 65 79 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 FunFam Peroxidase 37 182 - -
Vvi1g1200 339 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601
Vvi1g1200 339 CDD secretory_peroxidase 34 337 IPR033905 GO:0004601|GO:0042744
Vvi1g1200 339 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 107 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Vvi1g1200 339 ProSiteProfiles Plant heme peroxidase family profile. 33 338 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 Pfam Peroxidase 50 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1200 339 Gene3D - 37 338 - -
Vvi1g1200 339 Gene3D Peroxidase, domain 2 171 316 - -
Vvi1g1200 339 FunFam Peroxidase 171 316 - -
Vvi1g1200 339 SUPERFAMILY Heme-dependent peroxidases 34 338 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1200 Vvi-Chr1 16683286 16684598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1200 8 339 Peroxidase AT1G68850 66.866 4.06e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1200 K00430 - vvi:100261517 673.7