Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1199 ATGGCTCAAGATACTTCTGGTGCCGAATCACCTCAGCCGAGGCCAGGTCTCTTAAAAGATCAAGTTCGATTGGTTAGGCGAAAGAACTCTGATCGCTATGAGATTGTCCCAATCCAAGATCGTCTGTCATTTGAGAAGGGTTTTTTCATAGTTATCCGTGCATGCCAATTGCTAGCCCAAAATAATGATGGAATAATATTGGTAGGTTTAGCAGGTCCCTCTGGGGCTGGGAAGACTGTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGATCCCCGTTTGACAGACTATGATACATTGCTCCAGAATGTCCATGATCTGAAGGCTGGAAAGCAGGTTCAGATTCCAATTTATGATTTCAAGTCTAGCTCCCGCACAGGATACAGGACACTTGAAGTCCCAAGCTCCCGTATTGTGATCATTGAGGGTATCCATGCTTTGAGTGAAAAGATGCGACCTTTATTGGACCTCCGGGTATCTGTAACAGGTGGAATTCACTTTGATCTTGTCAAACGGGTTTTGAGGGACATACAACGTGCTGGGCAAGAACCAGAAGAAATCATTCAACAAATATCTGAAACGGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCGGAACAGCACATATAAAAATCACCAATAAGTTCAACCCATTCACTGGATTTCAGAGTCCCACTTATATTTTGAAGTCTGCGAGGAATGTGACAGTGGATCAAATCAAGGCTGTCATCACTGAAGAACATGCAGAAACTATGGAGGAAGTCTATGATATTTATCTTCTACCCCCTGGTGAAGATCCTGAATCTTGCCAATCATATTTAAGGATGCGGAATAAAGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTTACTGATAATCCATTTGTTATATCACCAAGAATAACTTTTGAAGTCAGTGTGCGGCTTCTTGGTGGGCTAATGGCCTTGGGGTACACAATAGCAACTATCCTGAAAAGAAACAGCCATGCATTTTCTGATGACAGGGTGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGACAAAGCTTAGTATAGATGAGGATATGGTTTCCAGCCCCAAAGAGGCTCTTTCTCGATTCTCTGCAGACAGTGTTGCTATGAGAAATAAGCACTTCAAGAGTGGTATGTCGCACTCATATTCAACCCATCGAGACAAGAATCTGTCTAATCATACTGGATTTTCCGTCAGCAACCGAAAGTTTGATGACAGACCCACAGAATTACCAGCAATGCTAGCAAACAAGGGAGCCATTACTCAGCTGTCAGAACAAATTTCATCACTAAATGATAGGATGGATGAATTTACAAGTCAGATTGAAGAGCTGAATTCCAAGTTAACCATGAAGAAAGTTTCTGCAAGCCAACAAAACTTGGCTTTTCAGGCTGAAGCAAACAATGGCTCTGCTCCTACTTTCTTCATCCCTGGCATAGGCAATGGTTCCTTGACTGGAACCATGATGCACAAATCCTCATCTTCCTCCCAGTTGGCTAAGGAGCTTCCTTTAATGGAAGAGATACTAGGAATTGCACGGAGTCAACGGCAAGTGATGCATCAGTTGGACAATATTAGCAGTCTTGTGCGGGAGGACATAGGAGGAGGGAGATCAGAGGGAGGAAGAAGAGAGAGGAAAAGCATAATGCTTGACATTGAACCCACTAGAGTTCCTCTGATATTGGCACTGGCAGTTGGTGGCTTGGGTATATTCTTGTTTAAAGCATTTCTACCCAGAAACTGA 1971 0.4242 MAQDTSGAESPQPRPGLLKDQVRLVRRKNSDRYEIVPIQDRLSFEKGFFIVIRACQLLAQNNDGIILVGLAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNVHDLKAGKQVQIPIYDFKSSSRTGYRTLEVPSSRIVIIEGIHALSEKMRPLLDLRVSVTGGIHFDLVKRVLRDIQRAGQEPEEIIQQISETVYPMYKAFIEPDLGTAHIKITNKFNPFTGFQSPTYILKSARNVTVDQIKAVITEEHAETMEEVYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHAFSDDRVCVKIDWLEQLNRQYIQVQGKDRLVVKCVGEQLQLEGSYSPRTYIEQIQLEKLVNEVMTKLSIDEDMVSSPKEALSRFSADSVAMRNKHFKSGMSHSYSTHRDKNLSNHTGFSVSNRKFDDRPTELPAMLANKGAITQLSEQISSLNDRMDEFTSQIEELNSKLTMKKVSASQQNLAFQAEANNGSAPTFFIPGIGNGSLTGTMMHKSSSSSQLAKELPLMEEILGIARSQRQVMHQLDNISSLVREDIGGGRSEGGRRERKSIMLDIEPTRVPLILALAVGGLGIFLFKAFLPRN* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1199 656 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
Vvi1g1199 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 238 IPR027417 -
Vvi1g1199 656 PRINTS Uridine kinase signature 224 237 - -
Vvi1g1199 656 PRINTS Uridine kinase signature 188 198 - -
Vvi1g1199 656 PRINTS Uridine kinase signature 65 82 - -
Vvi1g1199 656 PRINTS Uridine kinase signature 132 147 - -
Vvi1g1199 656 Coils Coil 496 523 - -
Vvi1g1199 656 CDD UMPK_like 67 239 - -
Vvi1g1199 656 Pfam CYTH domain 270 403 IPR023577 -
Vvi1g1199 656 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vvi1g1199 656 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vvi1g1199 656 Gene3D - 66 261 IPR027417 -
Vvi1g1199 656 PANTHER URIDINE KINASE 35 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1199 Vvi-Chr1 16623760 16636932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1199 67 236 PRT Gene Family AT5G40870 26.257 9.95e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1199 K00876 - vvi:100266718 1256.51