Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1196 ATGCTGGTATTGAAAAACAAGGCCCCTAAGTGGCATGAGCAACTCCAATGCTGGTGTCTGAACTTCAGTGGACGGGTGACAGTTGCATCAGTAAAGAATTTTCAGCTGGTTGCTTCTGCAGAGAATGGAGTTGCTGGTCAAGAGCATGAAAATGTCATTCTCTAG 165 0.4545 MLVLKNKAPKWHEQLQCWCLNFSGRVTVASVKNFQLVASAENGVAGQEHENVIL* 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1196 54 Pfam Tub family 1 54 IPR000007 -
Vvi1g1196 54 SUPERFAMILY Tubby C-terminal domain-like 2 42 IPR025659 -
Vvi1g1196 54 Gene3D Tubby Protein; Chain A 1 54 IPR025659 -
Vvi1g1196 54 PRINTS Tubby superfamily signature 4 21 IPR000007 -
Vvi1g1196 54 PRINTS Tubby superfamily signature 22 38 IPR000007 -
Vvi1g1196 54 PANTHER TUBBY-RELATED 2 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1196 Vvi-Chr1 16612824 16612988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1196 1 54 TUB Transcription Factor Family AT2G47900 87.037 7.05e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi1g1196 Tub 1.4e-23 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1196 K19600 - vvi:100244335 112.464