Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1195 ATGGGAGCGCATGACGTTTTGGCCTCAGAGGGAGCTGTTTTTAATTGGATGTGCAGTGAGAATGACAACATCTTGATCTCAAAAATTGAAAATCATTTTAGGGTTCAGATAATAGATTCTAGGCCAAGGGGCTCCCTCATTCAGTGTTATATAAAATGGAATCGTACCAACCAAACATATCATCTCTATCTCGGCTTAATTCAAGCTTCAACTAATGATGGAAAGTTTCTTCTTGCTGCATGGAACTGTAGACGTCCTACTTGCACAGACGATATCATCTCTCTTAATGATGATGATGTTTGGAAGGGGAGCACCACTTATATAGGAAAGTTGAGGTCAAATTTTCGGGGAACGAAGTTCACTGTGTATGATGCACATGCAACCTCTAAATGTAGGAGCAAGGATTAG 408 0.4044 MGAHDVLASEGAVFNWMCSENDNILISKIENHFRVQIIDSRPRGSLIQCYIKWNRTNQTYHLYLGLIQASTNDGKFLLAAWNCRRPTCTDDIISLNDDDVWKGSTTYIGKLRSNFRGTKFTVYDAHATSKCRSKD* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1195 135 PANTHER TUBBY-RELATED 39 126 - -
Vvi1g1195 135 Gene3D Tubby Protein; Chain A 28 135 IPR025659 -
Vvi1g1195 135 SUPERFAMILY Tubby C-terminal domain-like 33 129 IPR025659 -
Vvi1g1195 135 PRINTS Tubby superfamily signature 107 131 IPR000007 -
Vvi1g1195 135 PRINTS Tubby superfamily signature 91 107 IPR000007 -
Vvi1g1195 135 Pfam Tub family 41 129 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1195 Vvi-Chr1 16609653 16612318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1195 5 129 TUB Transcription Factor Family AT2G47900 56.589 2.45e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi1g1195 Tub 2.2e-25 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1195 K19600 - vvi:100244335 150.214