Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1192 ATGGAAACACTGAGAAGGGAAGCTGTTCTGTGCTTTGTGGCTTTTCTCTGCTTATGGAATTCCGCAAGTTCTTTGCTCTCTCCCAAAGGCGTCAACTTTGAAGTGCAAGCTTTGATGAGTATTAAAAATTCGCTGATAGATCCTCGCAGCGTGCTTGAAAATTGGGATAAAGATGCCGTTGATCCATGTAGCTGGAATATGATCACTTGTTCTGATGATAAACTAGTCATTAGCCTAGGAACCCCAAGTCAGAACTTATCCGGTACTCTTTCCCCAAGCATCGGAAACCTAACAAATCTCCAGACAGTACTCCTACAGGATAACAGCATATCAGGACCAATTCCCTCAGAGCTTGGAAAGCTATCAAAGCTTCACCTGCTTGATCTTTCTAATAATTTTTTCAATGGAGAGATCCCCACTTCCCTATCTCATCTCAAAAGCCTCCAGTACCTGAGGCTAAACAACAACAGTCTCTCCGGAGCAATTCCTTCATCCTTGGCTAATATGACTCACCTCGCGTTTCTGGACATGTCCTACAATAATTTGAGCGGTCCTGTACCAGGGTTTGCTGCCAGAACATTCAACATTGTTGGAAACCCTCTAATATGTCCAACCGGGACTGAGAAAGACTGCTTTGGGAGACCAACACCGCTGCCCGTCTCTATTAGCATGAACAATTCTCAAAGCTCTCAACCTTCTGCAAGACCTAAAAGTCACAAGGTTGCCTTAGCATTTGGGTCAAGCCTAGGATGCATCTGCCTACTGATTCTCGGATTCGGGTTTCTTCTCTGGTGGAGGCAGAGGCACAACCAGCAAATATTCTTTGATGTTAACGAACAATATCGTGAAGAAGTTTGCCTTGGAAACTTGAGGAGGTTTCCATTCAAAGAACTTCAAATTGCCACCAACAATTTCAGCAGCAAGAACATACTTGGAAAGGGTGGTTTCGGGAATGTCTACAAAGGATATCTCCAAGATGGTACTGTTGTAGCCGTGAAAAGGCTAAAAGATGGAAATGCCATTGGAGGGGTGATCCAATTTCAAACTGAAGTGGAGATGATAAGCCTTGCAGTGCATAGGAATCTCCTCAGACTTTATGGGTTTTGTATGACGACGACAGAGCGGCTCTTGGTTTACCCCTACATGTCAAACGGCAGCGTTGCTTATCGTCTTAAGGCCAAGCCAGCATTGGACTGGAGTACAAGGAAAAGAATTGCCTTGGGGGCCGCAAGGGGTTTATTGTACCTGCACGAGCAGTGTGACCCCAAGATAATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTGGATGACTACTGTGAGGCCGTAGTAGGAGATTTTGGTCTGGCAAAGCTTTTGGATCACCGGGATTCCCATGTCACAACAGCTGTTAGGGGTACTGTGGGGCATATAGCTCCAGAGTATCTCTCAACAGGCCAGTCCTCGGAAAAAACAGATGTTTTTGGATTTGGAATCCTTCTACTTGAATTAATTACCGGCCAAAGAGCTCTAGAATTTGGGAAAGCAGCAAACCAGAAAGGAGCTATGCTGGACTGGGTAAAGAAAATTCACCAGGAAAAGAAGCTGGATATGCTAGTGGACAAGGATCTGAAGGCCAACTATGACAGAATAGAGCTGGAGGAAATGGTTCAAGTAGCTCTCTTGTGCACCCAATACCTTCCGAGTCACAGACCTAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGAGATGGGCTCGCAGAGAAATGGGAAGCGACTCAAAGGGCGGAAGCAACCAGGTGCAAAGCCAATGAGTTCTCCTCTTCAGAAAGATACTCTGATCTTACTGATGACTCTTCATTGCTGGTGCAAGCAATGGAGCTCTCTGGACCCAGGTGA 1878 0.4558 METLRREAVLCFVAFLCLWNSASSLLSPKGVNFEVQALMSIKNSLIDPRSVLENWDKDAVDPCSWNMITCSDDKLVISLGTPSQNLSGTLSPSIGNLTNLQTVLLQDNSISGPIPSELGKLSKLHLLDLSNNFFNGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTHLAFLDMSYNNLSGPVPGFAARTFNIVGNPLICPTGTEKDCFGRPTPLPVSISMNNSQSSQPSARPKSHKVALAFGSSLGCICLLILGFGFLLWWRQRHNQQIFFDVNEQYREEVCLGNLRRFPFKELQIATNNFSSKNILGKGGFGNVYKGYLQDGTVVAVKRLKDGNAIGGVIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVAYRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLDMLVDKDLKANYDRIELEEMVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEATQRAEATRCKANEFSSSERYSDLTDDSSLLVQAMELSGPR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1192 625 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Vvi1g1192 625 SMART serkin_6 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1192 625 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Vvi1g1192 625 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1192 625 SUPERFAMILY Protein kinase-like (PK-like) 283 575 IPR011009 -
Vvi1g1192 625 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Vvi1g1192 625 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vvi1g1192 625 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Vvi1g1192 625 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Vvi1g1192 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Vvi1g1192 625 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Vvi1g1192 625 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Vvi1g1192 625 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1192 625 SUPERFAMILY L domain-like 34 202 - -
Vvi1g1192 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vvi1g1192 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1192 Vvi-Chr1 16552575 16555651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1192 1 625 Receptor kinase-like Gene Family AT5G16000 75.513 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi1g1192 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1192 - - vvi:100249555 1213.75