Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1185 ATGCTTCCAGGTGAATTCACAGGAATCCACTATATGGCTCCTGAGAATCCAACTCCCTTTCCTGCCAACTTCGGCATGACGTATGACAACACGCCAACCCTCCATTTTGGTGGATATTTAAGCAACCTAACCACTTCTCAGATCCCTCCTATTCATGAATTCACCCCACAGTCGTCAAGCCTGAGCAATAACTCTACTTCAGATGAAGCCGAGGAGCATCAACTCAGCATCATAGATGAAAGGAAGCAGAGAAGAATGATATCTAATAGAGAATCTGCTCGCAGGTCAAGGATGCGGAAACAGAAGCACCTGGATGAGCTCTGGTCGCAGGTCGTCCGTCTCAGAAATGAGAATCACAGCCTCATAGACAAGTTGAACCATGTGTCGGAGTGCCATGACCGGGTTCTTCAAGAGAATGTGAGGCTCAAGGAAGAAGCTTCTGACCTCCGCCAAATGCTCACGGACCTCCGAATAGGCAGTCCTTACACCACGTTGAGAGAGTTGGAGGGGGTTTCCTGCAACACAGCCCATCTCAGAGCTGAGTCCTCCAACCAATCCATCACTAGCTCCATAGACCTGCTTCATTGA 588 0.4898 MLPGEFTGIHYMAPENPTPFPANFGMTYDNTPTLHFGGYLSNLTTSQIPPIHEFTPQSSSLSNNSTSDEAEEHQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHSLIDKLNHVSECHDRVLQENVRLKEEASDLRQMLTDLRIGSPYTTLRELEGVSCNTAHLRAESSNQSITSSIDLLH* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1185 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Vvi1g1185 195 CDD bZIP_plant_GBF1 82 133 IPR045314 GO:0003700|GO:0006355
Vvi1g1185 195 Pfam bZIP transcription factor 81 138 IPR004827 GO:0003700|GO:0006355
Vvi1g1185 195 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 8 168 IPR044521 -
Vvi1g1185 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 130 IPR004827 GO:0003700|GO:0006355
Vvi1g1185 195 SUPERFAMILY Leucine zipper domain 81 130 IPR046347 GO:0003700|GO:0006355
Vvi1g1185 195 Gene3D - 79 135 - -
Vvi1g1185 195 Coils Coil 132 152 - -
Vvi1g1185 195 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Vvi1g1185 195 FunFam BZIP transcription factor 79 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1185 Vvi-Chr1 16444085 16444672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1185 18 167 bZIP Transcription Factor Family AT3G30530 59.477 8.13e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi1g1185 bZIP_1 8.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1185 - - vvi:100258132 392.119