Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1172 ATGATCAATAAGCCCAAGAGGCCCTTAGACAAGCCACCGTATCTTCCTCTACAAAATGTGTATGAGATTGATGGGATTGGAACTGTTTTAGTGGGACGTGTAGAAGTTGGTGCCCCGAAGTCCAATCCAAAGATTGATCTTATAAAGGAAACTACTAATTTTACCGCCCAAGTCATCATCATGGACTACCCTGGTCAGATCAGAAATGGTTATACTCCTGTTCTTGGCTGCAACTTCGTCTACCATTCACATCCCCAATCCACCACACCCATCATCATACCCATATCTTCTTCTTCCATACCCACTAAACCCACTTCTCTCACTACCTCCTCCACCCAGTCTACCACCAAACCCAATTCTCTCAATACCTCTCTCACTCATTCCTCCATTCATTTCCCTATAAGTTTCTTTTCCCATTCTTTCCCAAACTCATGCATAGCCACCTTTAGATACCTCATTTTCCAAACCCATTTCTTTCAATTCCTCTCCCATACCTTTCTACTCATCCCCTATGCGCAAGCAACTTTTGCATTGCACAACCATCCTCAATGGTCTCCATGCAACCATCCACCTATACCCAGTCCTCTACCCGATCTCCTTGTCACTTTTCCCATTCTCCTATCTGTATGCCTCGTTGCCAGGGTTAGTGAAGCTCTATTGGTTGGGAATATGACACCAGATTTTGAGATAGAAGCTGTTTTTTTTTTTTATCAGGAGTTTATCAAGGTTAAACTTTCAGAGTATATTGGGAAGTAA 756 0.4286 MINKPKRPLDKPPYLPLQNVYEIDGIGTVLVGRVEVGAPKSNPKIDLIKETTNFTAQVIIMDYPGQIRNGYTPVLGCNFVYHSHPQSTTPIIIPISSSSIPTKPTSLTTSSTQSTTKPNSLNTSLTHSSIHFPISFFSHSFPNSCIATFRYLIFQTHFFQFLSHTFLLIPYAQATFALHNHPQWSPCNHPPIPSPLPDLLVTFPILLSVCLVARVSEALLVGNMTPDFEIEAVFFFYQEFIKVKLSEYIGK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1172 251 SUPERFAMILY Translation proteins 5 50 IPR009000 -
Vvi1g1172 251 Gene3D Translation factors 8 66 - -
Vvi1g1172 251 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 50 81 IPR009001 -
Vvi1g1172 251 PANTHER ELONGATION FACTOR 1 ALPHA 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1172 Vvi-Chr1 16053790 16055267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1172 2 77 Eukaryotic Initiation Factors Gene Family AT5G60390 40.310 4.78e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1172 K03231 - aof:109840268 79.7221