Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1168 ATGGATATGAGTGACAAGGATAAATTTGAGCTAGAAAAGAGGAGTGGTGATTCTTTGAACTACCATTCAGCTAGTATGTCATCGGACTGGCGTTTCGGTGGCGGTGGTGGCAATCTCACAAATACGTCTATGAGTACGGTTCAGGGCGGTAATCCGATGGCAGTCTGCAAAGGGGATCTAGTTGGCTCTTCTTCATGTTCCTCGGCTTCCATGGTAGACTCATTTGGCCCAAACCTCTGGGACCATCCTGCCAATTCACAAACCTTAGGCTTTTGTGACATGAATGTCCAGAACAATGCAAGCACATCAAGCACACTAGGAATTAGAAAAGGGGGTCCAGGTTCTTTGAGAATGGATATTGATAAAACACTTGACATTGGTTGGAATCCACCGAGTTCGATGCTGAAAGGGGGTATCTTCTTACCGAATGCCCCTGGAATGCTCCCTCAGGGCTTGTCACAGTTTCCCGCTGATTCTGGTTTCATTGAGCGAGCAGCGAGGTTCTCATGCTTCAATGGAGGTAATTTTAGCGATATGATGAACCCTTTTAGCATTCCTGAATCTTTGAATCCTTATTCTAGAGGTGGGGGAATGCTGCAACAAGATGTTTTTGCAAGCAATGGGTTGAAATCAGTACCTGGAGGGCAATCTCAAAAGGATGAGCCAAGCATGGCTGAAATTTCAAAAGATGTTTCTTCGGCTGTGCGTGGGGCTATGGAAGGGAGTCCACTCAAGAATGAGAGAAAAAGTGAGAGCTTAGTGAAATCTCTTGAAGAAGCAAAACAAGGAATTGGGGTGTCTGGTAATGAATCTGACGAAGCCGAGTTCAGTGGAGGCGGTGGTGGTGGTCAAGAGGAGCCATCCATATTGGAGGGCACAGGTGGTGAACCTTCTTCTGGCAAGGGCCTTGGCTCGAAGAAAAGGAAAAGAAGTGGTCAGGACCCAGAGATTGATCAAGTCAAGGGAAGCCCACAGCAACCCGGAGAAGCTTCAAAGGATAACCCTGAAATTCAACATAAGGGAGACCAAAACCCAAGTTCAGTTCCCAGTAAGAACACTGGAAAACACGGTAAGCAGGGGGCACAAGCTTCAGATCCACCAAAGGAAGAATATATTCATGTCAGAGCACGGAGAGGTCAGGCAACAAACAGCCATAGTCTTGCAGAAAGAGTAAGAAGGGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGACCTGGTACCTGGTTGCAGCAAGGTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACCGTTAATCCGCGGCTGGATTTTAATATTGAAGGCATGCTTGGAAAAGATATCCTTCAATCAAGAGTAGGTCCTTCATCTACAATGGGTTTTTCGCCAGAAACAACTATGCCTTATCCTCAGCTACATCCATCTCAACCAGGATTGATTCAAGTAGGTCTTCCTGGCTTGGGGAACTCTTCTGATGCAATTAGGAGAACTATTAATTCCCAATTGGCGGCCATGAGTGGAGGGTACAAGGAGTCAGCACCCCAGCTACCTAATGTATGGGAGGATGAACTCCACAATGTTGTTCAAATGGGCTTTAGTACTGGTGCTCCCCTCAACAGCCAAGATTTAAATGGGTCTCTACCACCTGGCCATATGAAAGCTGAACTTTAA 1707 0.4599 MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGGGGNLTNTSMSTVQGGNPMAVCKGDLVGSSSCSSASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDIDKTLDIGWNPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMMNPFSIPESLNPYSRGGGMLQQDVFASNGLKSVPGGQSQKDEPSMAEISKDVSSAVRGAMEGSPLKNERKSESLVKSLEEAKQGIGVSGNESDEAEFSGGGGGGQEEPSILEGTGGEPSSGKGLGSKKRKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHGKQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDILQSRVGPSSTMGFSPETTMPYPQLHPSQPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLPNVWEDELHNVVQMGFSTGAPLNSQDLNGSLPPGHMKAEL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1168 568 MobiDBLite consensus disorder prediction 242 256 - -
Vvi1g1168 568 Gene3D - 377 450 IPR036638 GO:0046983
Vvi1g1168 568 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 252 483 IPR024097 GO:0006355
Vvi1g1168 568 MobiDBLite consensus disorder prediction 207 222 - -
Vvi1g1168 568 MobiDBLite consensus disorder prediction 340 359 - -
Vvi1g1168 568 MobiDBLite consensus disorder prediction 207 367 - -
Vvi1g1168 568 MobiDBLite consensus disorder prediction 547 568 - -
Vvi1g1168 568 FunFam Basic helix-loop-helix transcription factor 377 449 - -
Vvi1g1168 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 449 IPR036638 GO:0046983
Vvi1g1168 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 430 IPR011598 GO:0046983
Vvi1g1168 568 Pfam Helix-loop-helix DNA-binding domain 383 431 IPR011598 GO:0046983
Vvi1g1168 568 SMART finulus 386 436 IPR011598 GO:0046983
Vvi1g1168 568 MobiDBLite consensus disorder prediction 318 332 - -
Vvi1g1168 568 CDD bHLH_AtBPE_like 370 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1168 Vvi-Chr1 15903199 15906204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1168 1 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.279 3.79e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g1168 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1168 - - vvi:100265116 1091.26