Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1165 ATGGAACTTGGAAGTTATCTATACAGGACCTCTCCTGCCATAATAGAGTTGCAGACAACAAAAAATACCCCAGAAAATGCAATGAGGATTTTACAATCTCTATCCAAAAGCGTTGATTTGGCCAAGAATCTCGTGGGGCAATTGCAAAAGGACAGCCATCCAATTTCAGACCCTGAACTGGGAAGCATTATAGAACAGCTTGAGGGAGTGATAAAACTGATGGGAGAAGAATTGAGCTTGATACCACCATCAACATTTGGGAACCAAGAATATGCAGAAATTGCAGTCCGGTCTGTTTCAAAGGAGATGCAAAATGCTCGGTTTGGGGTCTGCCAAACGCAGGTAACTAGCCCAAAAGCACTGCAACCAAGGGCCTTGTCTTTGGAGGAGCTGCCTAAGGAACAAGTACCAACAGAAAGAGATCTTTACTCCATTGATTTTTCCACAGACAATCCTCAGCTACCAGACATACCACATCATATGAACGTCATTCCTAAAAGCAAATGTTACAGGAGCCAGAGAAACCATGAAAACATGAGCAATGGATCCCTGAAGAATATGCCACAAGTGACCCAGTTCATGGAGCCTTTCTATGAGACTTTCTTTTGCCCACTGACAAAGAATATCATGGAAGACCCAGTGACCATAGAAAGTGGAGTTACTTATGAAAGGAAAGCAATTACTGAATGGTTCGAAAAGTATAACAATTCAGCAGAAATTTGCTGTCCAGCCACAGGGCAAAAACTGCGTAGTAAAGGTTTGAGCACCAATATAGCTCTGAAGACCACAATAGAGGAGTGGAAGGAAAGGAATGAAGCAGCAAGAATCAAGGTTGCAAGAGCAGCTCTGTCTTTAGCCATTTCAGAGAGTATGGTACTTGAAGCACTAAATGATTTGCAGAGCATCTGTGGAAGGAAACCGTACAACAAGGTACAGATTCGCAATGTTGGAATGTTACCATTGCTTGTGAAGTTTCTGGAGTATAAAGACACGAATGTGAGACTTGCAACTCTGGAAATACTACGAGAACTGGCAGAAGATGATGAGGGCAAGGAAATGGTTGCAAAGGTAATGGACATTTCAACAACAATCAAGATGCTGTCAAGTGATCACCAACCCATAAGGCATGCAGCACTGCTGTTCTTGCTGGAGCTATCTAGATCCCAATCTCTCTGTGAGAAAATCGGGTCGGTTGCGGGAGGGATTCTAATGCTAATCACAATTAAATACAACTGGTCCTTTGATACTTTCGCATTAGAAAAGGCAGATGAAATCTTGAAAAACCTGGAGACATCTCCTAATAACATCAAGCGCATGGCAGACAATGGATACTTGGAACCCCTTCTACATCATCTCATTGAAGGTTGTGAAGAGATGAAGATGGAGATGGGAAGCTACCTTGGGGAAATTGCTTTGGGACACGACAGCAAAACCTATGTAGCTGAGAGGGCTTCCCCGGCTCTTGTCAAAATGTTACATACTGGGAACACTCTAACAAAGAAGGCAGCATTCAAAGCTCTAGAGCAAATCTCATCTTACCACCCAAATGGAAAAATACTTGTAGAAGCTGGAATTGTACAGATCGTGGTAGAAGAGATGTTGACCCCACGGAAAATCCACAATGAAACAATGAACTCAATAAAAGAAGCTGCTGCAATACTGGGAAATTTACTCGAATCCGGGATTGAGTTTGAGAACCTCCAAGTAAATACTCATGGTCACACCATGGGGTCAGACTACATTGTGTACAGCATCATCCACATGCTCAAGAACTCAACCCCAGATAAACTCAACACCAACCTGATAAGAATCCTGTTGTGCTTGGCCAAGTCCCCCAAATCAAATGCCACCATAGTGTCAGTGGTGAGAGAAACTGAAGCAAGCTACACCCTGATTGAACTCATAAATAACCCACATGAAGAACTGGGGATTGCATCAATGAAACTGCTCATTACACTCTCACCCTACCTTGGCCACACATTTGCAGAGAGACTATGCAAAACAAGGGGCCAACCTCAGAGCCTACTCCAAAGCCCAGGTGGGACAAACCAAATCACACAGAAGCAGGCAGTTTCAGCAAATTTCTTGGCAGACCTCCCCCACCAAAACCTGAGACTCAACCTAGCTCTTCTCAGCAATGATAGTGTCCCAATGATCCTACAATCCATCCATCAAATGCAAAGAAGTGGAACAAGAACAAGCAGGTATGCAAGTGCTTACTTAGAAGGCCTAGTGGGAATTATTGTCAGATTCACAACTACCCTATTTGAACCCCAAATGTTGTTTCTAGCGAGAAACTACAATTTCACTTCAGTGCTCACAGAACTGCTTACAAAAACATCAAGTGACAAAGTTCAGAGGTTATCAGCAATAGGGTTAAAAAACCTCTCATCAGAATCAGTAAATCTATCTAAACCACCACAAATAAAGAGAACCAAGTTCCTGAAATTTTTTAAGTTGCCCAGGTCTCTATCTGCTGGGTCATCAAAGAGCAAGAAAATACAAGTGTGCCCAGTTCACAGAGGGGCTTGTTCTTCACAGAACACCTTCTGTTTGGTGGACGCAAAGGCAGTTGAGAGGCTGTTGGCTTGCTTGGAGCATGAAAATGCCGAGGTTATTGAAGCTGCATTGTCCGCTCTATGCACATTGTTGGATGACAAAGTTGATGTGGACAAGAGTGTGAGCCTGCTCAGTGGAGTGGATTGCATACAACATGTGTTGAATGTGGTGAAAGAGCACAGGGAAGAGGGTTTGAGGGAAAAATCACTTTGGGTGATAGAGAGATTCCTGATGAAAGGTGGCGATAGGTCTGCTTCATACATATCACAGGACAGGTCGTTGCCTGCTACATTGGTAAGTGCTTTTCACCATGGGGACGGTAGTACAAAGCAGATGGCTGCGAAAATTTTAAGACATTTGAATCAGATGCCCAAAGTCACTACCAACTTTACTATCTAG 2958 0.4331 MELGSYLYRTSPAIIELQTTKNTPENAMRILQSLSKSVDLAKNLVGQLQKDSHPISDPELGSIIEQLEGVIKLMGEELSLIPPSTFGNQEYAEIAVRSVSKEMQNARFGVCQTQVTSPKALQPRALSLEELPKEQVPTERDLYSIDFSTDNPQLPDIPHHMNVIPKSKCYRSQRNHENMSNGSLKNMPQVTQFMEPFYETFFCPLTKNIMEDPVTIESGVTYERKAITEWFEKYNNSAEICCPATGQKLRSKGLSTNIALKTTIEEWKERNEAARIKVARAALSLAISESMVLEALNDLQSICGRKPYNKVQIRNVGMLPLLVKFLEYKDTNVRLATLEILRELAEDDEGKEMVAKVMDISTTIKMLSSDHQPIRHAALLFLLELSRSQSLCEKIGSVAGGILMLITIKYNWSFDTFALEKADEILKNLETSPNNIKRMADNGYLEPLLHHLIEGCEEMKMEMGSYLGEIALGHDSKTYVAERASPALVKMLHTGNTLTKKAAFKALEQISSYHPNGKILVEAGIVQIVVEEMLTPRKIHNETMNSIKEAAAILGNLLESGIEFENLQVNTHGHTMGSDYIVYSIIHMLKNSTPDKLNTNLIRILLCLAKSPKSNATIVSVVRETEASYTLIELINNPHEELGIASMKLLITLSPYLGHTFAERLCKTRGQPQSLLQSPGGTNQITQKQAVSANFLADLPHQNLRLNLALLSNDSVPMILQSIHQMQRSGTRTSRYASAYLEGLVGIIVRFTTTLFEPQMLFLARNYNFTSVLTELLTKTSSDKVQRLSAIGLKNLSSESVNLSKPPQIKRTKFLKFFKLPRSLSAGSSKSKKIQVCPVHRGACSSQNTFCLVDAKAVERLLACLEHENAEVIEAALSALCTLLDDKVDVDKSVSLLSGVDCIQHVLNVVKEHREEGLREKSLWVIERFLMKGGDRSASYISQDRSLPATLVSAFHHGDGSTKQMAAKILRHLNQMPKVTTNFTI* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1165 985 Gene3D - 256 471 IPR011989 -
Vvi1g1165 985 SUPERFAMILY ARM repeat 425 976 IPR016024 -
Vvi1g1165 985 SMART arm_5 432 472 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 757 798 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 306 346 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 513 559 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 347 387 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 845 885 IPR000225 GO:0005515
Vvi1g1165 985 SMART arm_5 473 512 IPR000225 GO:0005515
Vvi1g1165 985 Coils Coil 257 284 - -
Vvi1g1165 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 255 IPR013083 -
Vvi1g1165 985 SUPERFAMILY RING/U-box 188 277 - -
Vvi1g1165 985 ProSiteProfiles U-box domain profile. 196 274 IPR003613 GO:0004842|GO:0016567
Vvi1g1165 985 Pfam U-box domain 199 272 IPR003613 GO:0004842|GO:0016567
Vvi1g1165 985 CDD RING-Ubox_PUB 198 254 IPR045210 -
Vvi1g1165 985 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 981 - -
Vvi1g1165 985 Gene3D - 480 654 IPR011989 -
Vvi1g1165 985 Coils Coil 855 875 - -
Vvi1g1165 985 Gene3D - 757 981 IPR011989 -
Vvi1g1165 985 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 354 IPR000225 GO:0005515
Vvi1g1165 985 ProSiteProfiles HEAT repeat profile. 318 356 IPR021133 -
Vvi1g1165 985 SMART Ubox_2 200 267 IPR003613 GO:0004842|GO:0016567
Vvi1g1165 985 SUPERFAMILY ARM repeat 289 566 IPR016024 -
Vvi1g1165 985 Pfam Armadillo/beta-catenin-like repeat 845 883 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1165 Vvi-Chr1 15889129 15892357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1165 15 947 U-box Gene Family AT1G68940 53.646 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1165 - - vvi:100258226 1905.57