Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1145 ATGAAACAAGACAAGGGTCACCGGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGTTGAGCATGAAGAAAGAGGGTCCTCTCACCAAGAAAGATGGGAAGAACCATGACAAAGCTAATGCCATGCGATCAAAACATTCCGTCACAGAGCAACGCCGAAGGAGCAAGATTAATGAGAGATTTCAGATATTGAGAGATCTCATACCCCATAGTGATCAAAAGAGGGATACAGCGTCATTCCTATTAGAGGTTATTGAGTATGTTCAATATTTACAGGAAAAGGTACAAAAGTATGAAGGGTCATACCAAGGATTGACTCCAGAGCCCACAAAGTTAATGCCATGGAGAAACAGTCACTGGCGTGTTCAAAGTTTTGTTGGTCACCCTCAAGCCATAAATAATGGTTCTGGTCCTGGCTCGGCATTTTCTGGGAAGTTTGATGAGAATAACATCAATATTACTTCAACCATGCTTGTGAAGGCACAGAATCCAGTAGAATCTGACCTTAGCAGGGATGCCACCTGCAAAGCAATGGATCACCAATCTGAGTTTAACAAGGCAATCGTCATGCCCATATCTTTACAGTCAAACATGTCTGCTCCTGTCCAAAGTGAGGGTGGGCTTGTGCATCCTCTTCAGGGACCAGTTTCTGATGCACAATCGGCTGACTGCCCCATCACTAGTGAGACACTTAGTAAAAAAGAGGAGCTAATGATAGAAGGAGGCACAATTAGCATCTCAAGTGCTTATTCTCAGGGGCTATTAAATACTCTGACACAAGCACTGCAGAGTTCTGGTGTGGATCTGTCACAGGCCAGTATCTCAGTACAGATTGATCTTGGAAAGCGGGCAAATAGAGGACTGCCGTCGGGGACTTCCATTGCTAAGGATCATGAGAACCCCCCTCCTAGCAATCATATAATTGCACATCATAGGGATGCAAGCAGTGCCGAGGACTCGGATCAATCACAAAAGAGACTGAAGACATAA 987 0.4458 MKQDKGHREEEEEEEEEELSMKKEGPLTKKDGKNHDKANAMRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGLTPEPTKLMPWRNSHWRVQSFVGHPQAINNGSGPGSAFSGKFDENNINITSTMLVKAQNPVESDLSRDATCKAMDHQSEFNKAIVMPISLQSNMSAPVQSEGGLVHPLQGPVSDAQSADCPITSETLSKKEELMIEGGTISISSAYSQGLLNTLTQALQSSGVDLSQASISVQIDLGKRANRGLPSGTSIAKDHENPPPSNHIIAHHRDASSAEDSDQSQKRLKT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1145 328 Pfam Helix-loop-helix DNA-binding domain 42 91 IPR011598 GO:0046983
Vvi1g1145 328 SMART finulus 46 96 IPR011598 GO:0046983
Vvi1g1145 328 FunFam BHLH domain class transcription factor 38 110 - -
Vvi1g1145 328 CDD bHLH_AtBIM_like 39 115 - -
Vvi1g1145 328 MobiDBLite consensus disorder prediction 1 54 - -
Vvi1g1145 328 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 328 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vvi1g1145 328 MobiDBLite consensus disorder prediction 20 54 - -
Vvi1g1145 328 MobiDBLite consensus disorder prediction 282 328 - -
Vvi1g1145 328 Gene3D - 38 110 IPR036638 GO:0046983
Vvi1g1145 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 90 IPR011598 GO:0046983
Vvi1g1145 328 MobiDBLite consensus disorder prediction 302 328 - -
Vvi1g1145 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1145 Vvi-Chr1 15387184 15409114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1145 1 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 53.571 1.72e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g1145 HLH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1145 - - vvi:100246122 630.557