Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1134 ATGGGTCATCATTGCTGCAGCAAACAGAAAGTCAAGAGAGGGCTATGGTCCCCTGAAGAAGATGAGAAGCTAATCAGATACATCACAACTAATGGCCATGGTTGTTGGAGCTCTGTTCCAAAACTAGCAGGCTTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAACTACCTGAGACCGGATCTCAAAAGGGGTTCTTTTTCTGCACAAGAAGAAAGAACGATCATTGATGTTCATAGAATTGTAGGCAACAAATGGGCTCAGATAGCCAAGTATTTGCCAGGTAGAACTGACAATGAGGTGAAGAACTTTTGGAACTCATGCATCAAGAAAAAGCTTATTGCACAAGGGTTAGATCCCAACACTCACCATCTCCTCCTTCCTATTGACCAGATTAACAATAACAATAACAACACCAACGCATGCACTCTCTCACATATCCATCAACAACCCACTGCTTTAGTATTTTCTTCAAATACACAGATGATCAAAGATGCTAAAATGGACATGAAATCTCCTTTTCTGACATTACCTCCACTTCCTCCTCCTCCTGACACTAGTAATTCTATCCATCCTCCCTCATTGCACGGAATCTCAGCCATCCCTCCCTTTGAATTCCTAAACCCTAACTATGTTTGGATGACAACTGTTAGCGATCAAAACCAGCATGCTGTGATGGAGTTGGTGAACCGATCCTCAATGGGTCGAAGTACTCCAATCGGGCCTTATCAGATAAATCCATCTGGGTTTGAGGTCCTGGAAGAGAATTATATGCGGGACACCATAGCCAGCCTTGAACCCAGAAAGCAATTAGAAGGAGTGCAACAGCAGCAGGAGGAGGACAAGGTTTGTGAAGGGAAAGCAGATAATTCCAAGGAATTGAGAAATGGTGAGAACATAGACAATTCATTTGACAGCTGTAGCTTTGATCTTGAGTTGGAGTACTCGGGGCTCTTGCCTTGTGGGACTGGAATGTATTGTAGCAGTACTAGTTCAAGTTGTATCGATCAACTTACATGGGGGGATTGTTAG 1038 0.4335 MGHHCCSKQKVKRGLWSPEEDEKLIRYITTNGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSAQEERTIIDVHRIVGNKWAQIAKYLPGRTDNEVKNFWNSCIKKKLIAQGLDPNTHHLLLPIDQINNNNNNTNACTLSHIHQQPTALVFSSNTQMIKDAKMDMKSPFLTLPPLPPPPDTSNSIHPPSLHGISAIPPFEFLNPNYVWMTTVSDQNQHAVMELVNRSSMGRSTPIGPYQINPSGFEVLEENYMRDTIASLEPRKQLEGVQQQQEEDKVCEGKADNSKELRNGENIDNSFDSCSFDLELEYSGLLPCGTGMYCSSTSSSCIDQLTWGDC* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1134 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vvi1g1134 345 MobiDBLite consensus disorder prediction 275 299 - -
Vvi1g1134 345 CDD SANT 68 108 IPR001005 -
Vvi1g1134 345 Gene3D - 10 66 - -
Vvi1g1134 345 SMART sant 12 62 IPR001005 -
Vvi1g1134 345 SMART sant 65 113 IPR001005 -
Vvi1g1134 345 Gene3D - 67 143 - -
Vvi1g1134 345 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi1g1134 345 FunFam MYB transcription factor 5 65 - -
Vvi1g1134 345 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vvi1g1134 345 CDD SANT 16 60 IPR001005 -
Vvi1g1134 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vvi1g1134 345 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi1g1134 345 PANTHER MYB DOMAIN PROTEIN 55 1 248 - -
Vvi1g1134 345 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vvi1g1134 345 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vvi1g1134 345 FunFam Myb transcription factor 68 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1134 Vvi-Chr1 15079156 15080270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1134 1 128 MYB Transcription Factor Family AT3G12720 84.375 1.08e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g1134 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1134 K09422 - vvi:100258147 696.812