Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1131 ATGGCGATGCTGAAGAGAATTGTATGGGTTACTGTTATTGTTGCCTTGATGTGCCTTTCATCTGGTTATTATGTGTTGTGCAAGGAAGAGGAGGAGACTCTGAGGATTCTGTTGGAGATTAAGGAGTCATTTGAGGAAGACCCTCAAAATGTGTTGGATGAGTGGTCTGTGGATAATCCCAGTTTCTGTAGCTGGAGAAGAGTTTCATGTAGTGACGGCTACCCTGTTCATCAAGTGGTAGCTCTCAACCTCTCTCAGTCCTCATTAGCTGGCTCCATATCTCCCTCCCTTGCTCGTTTAACAAACCTGCTCCACCTTGATCTTTCTTCTAACCGCCTCACCGGTTCCATTCCACCTAACCTTTCTAACCTTTCTTCTTTGCTTTCTCTACTCCTTTTTTCTAATCAACTTTCTGGTTCCATTCCAGCTCAACTCAGTTCCCTCACCAATCTCCGAGTCATGAGAATTGGGGACAATGCTCTCAGCGGTTCAATTCCTCCCTCCTTTGGGAATCTCCTCAACTTGGTCACTCTTGGTTTAGCATCATCTCTTCTCACCGGCCCAATACCTTGGCAACTCGGCCGACTCACTCGACTTGAGAACCTGATTCTGCAGCAAAACAAACTCGAGGGTCCTATTCCACCCGACCTCGGCAACTGTTCAAGCCTTGTAGTGTTCACATCTGCACTCAACCGTCTCAACGGATCAATCCCACCAGAACTGGCTCTTCTCAAGAATCTCCAACTTCTGAACCTGGCCAACAACACTCTATCTGGGGCGATTCCAGGCCAACTTGGTGAATCGACTCAGCTTGTTTATCTCAACCTTATGGCCAATCAACTTGAAGGTCCAATCCCAAGGTCTCTGGCACGCTTGGGTAGTCTTCAGACTCTTGATTTATCGGTGAATAAGCTCACTGGACAAATTCCACCAGAATTGGGCAACATGGGGCAGTTGGTATACATGGTGCTGTCAACCAACCATCTTTCTGGTGTTATACCAAGAAACATATGTTCCAACACCACCACTATGGAACACTTGTTCCTGTCAGAGAATCAAATATCTGGTGAAATTCCAGCAGATTTGGGATTGTGTGGGTCCTTGAAGCAGCTTAATTTGGCCAATAACACCATCAATGGGTCCATACCCGCTCAACTTTTCAAGTTACCATATCTGACTGATCTCTTGCTCAACAACAACAGCTTGGTCGGTTCAATTTCTCCCTCCATAGCAAACCTCAGCAATCTGCAGACGCTTGCATTATATCAAAACAATTTGCGTGGAAATCTACCCAGAGAGATTGGAATGCTTGGGAAGCTTGAAATTCTGTATATTTATGATAATCGGTTATCTGGGGAGATTCCTCTAGAGATTGGCAACTGTTCGAGCTTGCAAAGGATCGATTTTTTTGGAAATCATTTCAAGGGGCAAATTCCAGTCACCATTGGCAGGCTAAAGGAACTGAATTTTCTTCATCTCAGACAGAATGACCTGTCCGGTGAAATTCCCCCCACCTTGGGCAACTGCCATCAGCTAACTATCTTGGACCTGGCAGACAACAGCCTTTCTGGAGGCATCCCTGCGACATTTGGATTCCTCCGAGTCCTTGAGGAGCTGATGCTTTACAACAACTCTCTTGAAGGTAATCTCCCTGACGAGCTGATCAATGTTGCCAACCTGACCAGAGTAAATCTCTCCAATAACAAATTGAATGGTAGCATTGCTGCATTGTGTAGCTCTCATTCCTTTCTTTCTTTTGATGTCACAAACAACGCATTTGATGGCCAGATTCCAAGAGAGTTGGGATTTTCACCTTCTCTTCAAAGGCTTCGGCTAGGGAACAACCATTTCACAGGGGCAATCCCCAGGACCCTGGGAGAAATCTACCAACTTTCACTTGTGGATTTCTCAGGCAATTCGCTCACTGGATCAGTACCAGCTGAGCTTTCATTGTGCAAGAAACTGACCCATATTGATCTCAATAGCAACTTTCTTTCTGGGCCAATCCCATCCTGGCTTGGAAGTTTGCCCAATTTAGGAGAGCTCAAACTCTCCTTCAACTTATTTTCTGGGCCCCTTCCTCACGAACTATTTAAGTGCTCCAATCTGCTGGTTCTTTCACTTGATAACAATCTCCTTAATGGGACTCTGCCTTTGGAAACCGGTAATCTTGCATCCCTTAATGTTCTCAACCTCAACCAAAACCAATTTTATGGACCAATTCCTCCTGCCATAGGTAACTTAAGCAAGCTTTATGAACTTCGTCTCTCAAGAAACAGCTTTAATGGTGAAATACCTATTGAGCTTGGAGAACTCCAGAATCTTCAAAGTGTTTTAGACCTCAGTTACAACAATCTTACTGGGGAAATCCCACCTTCTATTGGAACACTGTCCAAACTGGAGGCGCTTGATCTATCTCACAATCAACTTGTTGGTGAAATCCCATTCCAAGTGGGTGCGATGAGTAGCTTGGGCAAGCTTAACTTCTCCTATAACAACCTTGAGGGCAAATTGGACAAGGAATTCTTGCACTGGCCAGCAGAGACGTTCATGGGAAACCTGCGTCTTTGTGGAGGGCCTCTGGTTCGCTGCAACAGTGAGGAATCCAGTCATCATAACTCAGGCCTAAAGTTATCATATGTGGTGATAATATCAGCATTTTCAACCATTGCTGCAATTGTTCTACTGATGATTGGAGTTGCCCTGTTTCTTAAAGGCAAGCGAGAGTCCCTTAACGCAGTGAAGTGTGTTTACTCTTCCAGTTCTTCCATAGTACACCGAAGACCACTCCTCCCCAACACTGCTGGGAAGCGAGATTTCAAATGGGGAGACATAATGCAAGCTACAAACAATCTGAGTGACAATTTTATAATTGGGTCAGGAGGGTCTGGAACGATCTACAAGGCTGAGTTATCCAGTGAAGAAACAGTGGCAGTGAAGAAGATACTGAGGAAAGATGATCTCCTGCTGAATAAAAGCTTTGAAAGAGAAATTAGGACCCTGGGAAGGGTTAGGCACAGGCACCTAGCAAAGTTGCTGGGTTGTTGTGTCAACAAAGAAGCAGGTTTTAATCTGTTGGTATACGAGTACATGGAGAATGGAAGCTTATGGGATTGGCTGCACCCAGAATCAGTGAGTAGCAAGAAAAGGAAGAGCCTTGACTGGGAGGCGAGGTTAAGGGTTGCAGTGGGATTAGCTAAGGGAGTGGAGTATCTCCACCATGACTGTGTCCCCAAGATCATTCACAGGGACATCAAGTCCAGCAATGTGTTGCTTGACTCTAATATGGAGGCACATTTAGGGGATTTTGGGCTGGCAAAGACTCTGGTTGAGAATCACAACTCCTTCAACACCGACTCAAACTCATGGTTCGCTGGGTCTTACGGTTATATTGCTCCAGAATATGCTTATTCATTGAAGGCAACGGAGAAAAGTGATGTTTATAGTTTGGGTATCGTGCTGGTTGAGCTAGTGAGTGGAAAGATGCCAACAGACGAAATTTTTGGGACGGATATGAACATGGTGAGGTGGGTTGAATCGCACATTGAAATGGGACAATCGAGCCGAACGGAGTTGATTGATTCTGCATTGAAGCCAATTCTACCAGATGAAGAATGCGCAGCATTCGGAGTGCTTGAGATCGCACTGCAATGCACAAAAACTACCCCAGCAGAAAGGCCGTCTTCTCGCCAAGTTTGCGATTCCCTAGTCCATTTGTCCAACAACAGAAATAGAATGGTGGACTGCCATAAGAACCCCCATTGA 3765 0.4531 MAMLKRIVWVTVIVALMCLSSGYYVLCKEEEETLRILLEIKESFEEDPQNVLDEWSVDNPSFCSWRRVSCSDGYPVHQVVALNLSQSSLAGSISPSLARLTNLLHLDLSSNRLTGSIPPNLSNLSSLLSLLLFSNQLSGSIPAQLSSLTNLRVMRIGDNALSGSIPPSFGNLLNLVTLGLASSLLTGPIPWQLGRLTRLENLILQQNKLEGPIPPDLGNCSSLVVFTSALNRLNGSIPPELALLKNLQLLNLANNTLSGAIPGQLGESTQLVYLNLMANQLEGPIPRSLARLGSLQTLDLSVNKLTGQIPPELGNMGQLVYMVLSTNHLSGVIPRNICSNTTTMEHLFLSENQISGEIPADLGLCGSLKQLNLANNTINGSIPAQLFKLPYLTDLLLNNNSLVGSISPSIANLSNLQTLALYQNNLRGNLPREIGMLGKLEILYIYDNRLSGEIPLEIGNCSSLQRIDFFGNHFKGQIPVTIGRLKELNFLHLRQNDLSGEIPPTLGNCHQLTILDLADNSLSGGIPATFGFLRVLEELMLYNNSLEGNLPDELINVANLTRVNLSNNKLNGSIAALCSSHSFLSFDVTNNAFDGQIPRELGFSPSLQRLRLGNNHFTGAIPRTLGEIYQLSLVDFSGNSLTGSVPAELSLCKKLTHIDLNSNFLSGPIPSWLGSLPNLGELKLSFNLFSGPLPHELFKCSNLLVLSLDNNLLNGTLPLETGNLASLNVLNLNQNQFYGPIPPAIGNLSKLYELRLSRNSFNGEIPIELGELQNLQSVLDLSYNNLTGEIPPSIGTLSKLEALDLSHNQLVGEIPFQVGAMSSLGKLNFSYNNLEGKLDKEFLHWPAETFMGNLRLCGGPLVRCNSEESSHHNSGLKLSYVVIISAFSTIAAIVLLMIGVALFLKGKRESLNAVKCVYSSSSSIVHRRPLLPNTAGKRDFKWGDIMQATNNLSDNFIIGSGGSGTIYKAELSSEETVAVKKILRKDDLLLNKSFEREIRTLGRVRHRHLAKLLGCCVNKEAGFNLLVYEYMENGSLWDWLHPESVSSKKRKSLDWEARLRVAVGLAKGVEYLHHDCVPKIIHRDIKSSNVLLDSNMEAHLGDFGLAKTLVENHNSFNTDSNSWFAGSYGYIAPEYAYSLKATEKSDVYSLGIVLVELVSGKMPTDEIFGTDMNMVRWVESHIEMGQSSRTELIDSALKPILPDEECAAFGVLEIALQCTKTTPAERPSSRQVCDSLVHLSNNRNRMVDCHKNPH* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 286 384 - -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 479 575 IPR032675 -
Vvi1g1131 1254 Gene3D Transferase(Phosphotransferase) domain 1 1031 1252 - -
Vvi1g1131 1254 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 191 - -
Vvi1g1131 1254 FunFam Leucine-rich repeat receptor-like protein kinase 1031 1252 - -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 147 226 IPR032675 -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 291 368 IPR032675 -
Vvi1g1131 1254 SMART LRR_typ_2 365 389 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 772 795 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 148 171 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 533 557 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 485 509 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 413 436 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 797 821 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 100 124 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 724 748 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 244 268 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 292 316 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 676 700 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 437 461 IPR003591 -
Vvi1g1131 1254 SMART LRR_typ_2 196 220 IPR003591 -
Vvi1g1131 1254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 914 1030 - -
Vvi1g1131 1254 Pfam Leucine Rich Repeat 654 676 IPR001611 GO:0005515
Vvi1g1131 1254 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515
Vvi1g1131 1254 SUPERFAMILY Protein kinase-like (PK-like) 932 1237 IPR011009 -
Vvi1g1131 1254 ProSiteProfiles Leucine-rich repeat profile. 102 125 IPR001611 GO:0005515
Vvi1g1131 1254 SUPERFAMILY L domain-like 338 642 - -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 32 146 IPR032675 -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 227 290 IPR032675 -
Vvi1g1131 1254 ProSitePatterns Protein kinases ATP-binding region signature. 958 981 IPR017441 GO:0005524
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 576 868 - -
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 192 285 - -
Vvi1g1131 1254 SUPERFAMILY L domain-like 50 382 - -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 369 478 IPR032675 -
Vvi1g1131 1254 ProSiteProfiles Protein kinase domain profile. 952 1241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1131 1254 SUPERFAMILY L domain-like 582 839 - -
Vvi1g1131 1254 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 479 575 - -
Vvi1g1131 1254 Gene3D Ribonuclease Inhibitor 576 873 IPR032675 -
Vvi1g1131 1254 Pfam Protein kinase domain 957 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1131 1254 FunFam Uncharacterized protein 385 478 - -
Vvi1g1131 1254 PRINTS Leucine-rich repeat signature 295 308 - -
Vvi1g1131 1254 PRINTS Leucine-rich repeat signature 797 810 - -
Vvi1g1131 1254 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 607 1236 - -
Vvi1g1131 1254 Gene3D Phosphorylase Kinase; domain 1 918 1030 - -
Vvi1g1131 1254 Coils Coil 27 47 - -
Vvi1g1131 1254 SMART serkin_6 952 1237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1131 1254 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1131 Vvi-Chr1 14955665 14959548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1131 37 670 Receptor kinase-like Gene Family AT1G17750 33.624 3.88e-86 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi1g1131 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1131 - - vvi:100254655 2438.3