Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1127 ATGGCTGCAGCTCCTGATGTGAGGTTTGTCTTCCTGTCTTCTCTACTTCTCGTTTGCGTTACTTCTCATTCAGTTTCTTCACATCACCCATCTGCACTCAAAAAGCAAGCTTCGACCCTGGTTGCCCTTAAACAAGCTTTTGAAGCTCCCCATCCTTCTTTGAATAGCTGGAAGGTGTCAAACTACAGGTCTCTCTGCTCTTGGACTGGCGTCCAATGTGATGATACCAGCACATGGGTAGTTTCTTTAGACATATCTAATTCTAACATTTCTGGTGCTCTGTCACCTGCAATCATGGAACTTGGAAGTCTTCGTAATCTTTCAGTGTGTGGAAACAATTTGGCTGGCAGTTTCCCGCCTGAAATCCACAAGTTATCACGCCTTCAATACCTCAACATATCCAACAATCAGTTCAATGGAAGTTTGAACTGGGAGTTCCATCAGTTAAAAGAGCTTGCGGTGCTTGATGCCTATGACAACAATTTCCTCGGCTCACTTCCAGTGGGCGTGACTCAACTTCCCAAGTTGAAGCACTTGGATTTTGGCGGCAATTATTTTTCCGGAAAAATCCCAAGAAACTATGGAGGTATGGTGCAGCTCACTTATCTGTCACTTGCAGGTAATGATTTGGGTGGTTATATACCTGTAGAGCTTGGGAATCTGACGAACCTGAAGCGGCTTTACTTGGGTTACTATAACGAGTTTGATGGCGGAATTCCACCAGAGTTGGGAAAGTTGGTCAATCTAGTTCATCTAGACCTCTCAAGTTGTGGCTTGGAGGGTCCAATTCCGCCAGAGTTGGGTAATCTTAAACATCTGGACACTCTCTTTTTGCAAACAAATCAACTCAGTGGTTCCATCCCCCCTCAGCTTGGCAATTTGAGTAGCTTGAAATCTCTTGATCTTTCAAACAATGGACTCACAGGAGAAATCCCACTTGAGTTTTCGGAGCTCACTGAGCTGACTCTCTTGCAACTATTCATCAACAAGTTTCACGGAGAGATTCCCCACTTCATTGCAGAGCTTCCCAAGTTGGAAGTCCTGAAGCTTTGGCAGAATAACTTCACTGGAACCATTCCTTCCAAGCTTGGGCGGAATGGAAAACTGAGTGAACTCGACCTGTCTACCAATAAGCTCACCGGATTGATCCCTAAATCTCTCTGCTTTGGAAGGAGGCTTAAGATACTGATTTTGCTTAACAATTTTCTATTTGGGCCTCTACCAGATGATCTTGGTCGATGTGAGACTCTACAGAGAGTCCGACTGGGGCAGAATTATTTGAGTGGATTTATACCAAATGGGTTTCTCTACTTGCCTCAGCTATCACTCATGGAACTGCAGAACAATTACCTCACCGGGGGGTTTCCAGAAGAATCAAGCAAGGTACCCTCAAAAGTTGGCCAGCTGAATCTCTCAAACAATCGATTATCTGGGTCTCTCCCAACGTCTATTGGAAATTTCTCAAGCTTGCAGATTCTTCTACTAAATGGAAACCGATTCACAGGGAACATTCCATCTGAAATAGGTCAGTTGATAAGCATCTTAAAGTTGGACATGAGAAGAAACAACTTCTCTGGCATAATCCCTCCGGAGATCGGGCATTGTCTTTCACTGACTTATTTGGATTTGAGCCAAAATCAAATCTCTGGTCCAATCCCAGTTCAAATTGCTCAAATTCACATATTAAATTACCTCAATCTCTCTTGGAACCACATGAACCAAAACCTCCCCAAGGAAATTGGGTTCATGAAGAGCCTAACCTCCGTAGATTTCTCCCACAATAATTTTTCTGGTTGGATACCTCAAATAGGACAATATTCATTCTTCAATTCCTCTTCCTTCGTTGGTAACCCTCAGCTCTGTGGATCCTACCTGAACCAATGCAACTATTCATCAGCCTCACCTTTAGAATCCAAGAATCAACATGACACCAGCTCGCATGTCCCAGGAAAATTCAAGCTTGTTTTGGCTTTGAGTCTCTTGATTTGTTCTTTGATATTTGCTGTTTTGGCAATAGTCAAAACCCGAAAGGTGAGGAAGACTTCAAATTCATGGAAGCTCACAGCATTCCAAAAGCTAGAATTTGGAAGCGAAGACATCTTAGAATGCTTAAAGGACAATAATGTTATAGGGAGAGGTGGAGCAGGGATTGTCTACAGGGGAACAATGCCGAATGGGGAACAAGTTGCAGTGAAGAAGTTGCAAGGAATAAGCAAAGGCTCTTCCCATGATAATGGCCTTTCTGCAGAAATACAGACGTTGGGTAGGATTCGACACAGGAATATAGTGCGGCTGCTGGCATTTTGTTCAAACAAAGAGACCAATTTACTTGTCTACGAGTACATGCCAAATGGGAGCTTAGGTGAAGTTCTACACGGGAAAAGAGGCGGGCATCTCAAGTGGGACACTAGGCTAAAAATAGCCATAGAAGCTGCAAAGGGCCTCTGTTACTTGCACCACGATTGTTCTCCATTAATACTCCACCGAGATGTGAAGTCCAATAACATCTTACTCAACTCCGATTATGAGGCTCACGTAGCAGATTTTGGACTCGCCAAGTTCTTGCAAGACAATGGAACTTCAGAGTGCATGTCTGCAATAGCGGGCTCTTACGGTTACATTGCTCCAGAGTACGCCTACACATTGAAAGTTGATGAGAAGAGCGATGTTTACAGCTTTGGGGTGGTGCTGTTGGAGCTGATAACAGGGCGAAGACCAGTTGGTGGGTTTGGAGAAGAAGGATTGGACATTGTTCAATGGAGCAAGATACAAACCAACTGGAGCAAGGAAGGAGTGGTGAAAATCCTAGATGAACGACTAAGAAACGTTCCAGAGGATGAAGCAATCCAGACGTTCTTTGTTGCAATGCTGTGTGTCCAAGAGCACAGCGTGGAGCGACCGACTATGAGAGAAGTTATTCAGATGCTTGCACAAGCTAAGCAACCCAATACATTTCATATGCAATGA 2967 0.4402 MAAAPDVRFVFLSSLLLVCVTSHSVSSHHPSALKKQASTLVALKQAFEAPHPSLNSWKVSNYRSLCSWTGVQCDDTSTWVVSLDISNSNISGALSPAIMELGSLRNLSVCGNNLAGSFPPEIHKLSRLQYLNISNNQFNGSLNWEFHQLKELAVLDAYDNNFLGSLPVGVTQLPKLKHLDFGGNYFSGKIPRNYGGMVQLTYLSLAGNDLGGYIPVELGNLTNLKRLYLGYYNEFDGGIPPELGKLVNLVHLDLSSCGLEGPIPPELGNLKHLDTLFLQTNQLSGSIPPQLGNLSSLKSLDLSNNGLTGEIPLEFSELTELTLLQLFINKFHGEIPHFIAELPKLEVLKLWQNNFTGTIPSKLGRNGKLSELDLSTNKLTGLIPKSLCFGRRLKILILLNNFLFGPLPDDLGRCETLQRVRLGQNYLSGFIPNGFLYLPQLSLMELQNNYLTGGFPEESSKVPSKVGQLNLSNNRLSGSLPTSIGNFSSLQILLLNGNRFTGNIPSEIGQLISILKLDMRRNNFSGIIPPEIGHCLSLTYLDLSQNQISGPIPVQIAQIHILNYLNLSWNHMNQNLPKEIGFMKSLTSVDFSHNNFSGWIPQIGQYSFFNSSSFVGNPQLCGSYLNQCNYSSASPLESKNQHDTSSHVPGKFKLVLALSLLICSLIFAVLAIVKTRKVRKTSNSWKLTAFQKLEFGSEDILECLKDNNVIGRGGAGIVYRGTMPNGEQVAVKKLQGISKGSSHDNGLSAEIQTLGRIRHRNIVRLLAFCSNKETNLLVYEYMPNGSLGEVLHGKRGGHLKWDTRLKIAIEAAKGLCYLHHDCSPLILHRDVKSNNILLNSDYEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGGFGEEGLDIVQWSKIQTNWSKEGVVKILDERLRNVPEDEAIQTFFVAMLCVQEHSVERPTMREVIQMLAQAKQPNTFHMQ* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 35 145 - -
Vvi1g1127 988 Pfam Leucine Rich repeat 534 550 IPR001611 GO:0005515
Vvi1g1127 988 SUPERFAMILY L domain-like 309 629 - -
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 782 988 - -
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 234 339 - -
Vvi1g1127 988 Pfam Protein tyrosine and serine/threonine kinase 707 976 IPR001245 GO:0004672|GO:0006468
Vvi1g1127 988 Gene3D Ribonuclease Inhibitor 358 632 IPR032675 -
Vvi1g1127 988 Gene3D Phosphorylase Kinase; domain 1 669 781 - -
Vvi1g1127 988 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515
Vvi1g1127 988 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Vvi1g1127 988 Pfam Leucine Rich Repeat 248 270 IPR001611 GO:0005515
Vvi1g1127 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Vvi1g1127 988 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Vvi1g1127 988 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi1g1127 988 SUPERFAMILY L domain-like 63 383 - -
Vvi1g1127 988 Gene3D Ribonuclease Inhibitor 252 357 IPR032675 -
Vvi1g1127 988 Gene3D Ribonuclease Inhibitor 143 246 IPR032675 -
Vvi1g1127 988 Gene3D Transferase(Phosphotransferase) domain 1 782 987 - -
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 146 233 - -
Vvi1g1127 988 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 218 314 - -
Vvi1g1127 988 ProSiteProfiles Protein kinase domain profile. 704 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1127 988 SMART LRR_typ_2 197 221 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 342 366 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 125 148 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 487 511 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 294 318 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 583 606 IPR003591 -
Vvi1g1127 988 SMART LRR_typ_2 246 270 IPR003591 -
Vvi1g1127 988 SUPERFAMILY Protein kinase-like (PK-like) 699 976 IPR011009 -
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 346 632 - -
Vvi1g1127 988 SMART serkin_6 704 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1127 988 ProSiteProfiles Leucine-rich repeat profile. 296 317 IPR001611 GO:0005515
Vvi1g1127 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 673 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1127 Vvi-Chr1 14812451 14816337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1127 22 978 Receptor kinase-like Gene Family AT5G65700 59.917 0.0 1144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi1g1127 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1127 - - vvi:100258232 1910.19