Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1109 ATGGCCACTCTCTTTACTCTCGTATCATCTTCTTCCTCTGTTTTCTTCTTCCCTATCAAAACCCTAAAAAACCCACCAATCATTCACTCTAGAAGGCCGCCTTTCTCCCTTACTTGTCTCCGGTCGTTGGAAACTAACCCACCACCCCCAGTTCAGACCTTCTGGAAATGGCTTTTCGACCAAGGCGTAGTCTCCGGCAAGACTCCGGTAAAGCCGGGGATCGTCCCAGAAGGCCTAGGACTCGTTGCCCAGAGAGACATTGCTCGAAACGAGGCTGTTTTGGAAGTGCCCAAGAGGTTTTGGATAAACCCAGATGCAGTAGCAGCTTCGGAGATTGGGAGTGTATGTGGTGGCCTGAAGCCTTGGGTGTCTGTTGCTCTGTTCTTGATCAGAGAGAAGTTGAGAGACGAGTCGCCATGGCGAAGTTACCTTGATATTCTTCCAGAGTACACCAATTCTACTATTTATTGGTCAGAAGAGGAGCTCGTTGAGATTCAAGGAACACAACTGTCGAACACAACCTTAGGTGTGAAGGAATATGTGCAAAGTGAATTTCTTAAAGTTGAAGAAGAAGTCATACTCCCTCACAGCCAGCTTTTCCCTTTTCCTGTAACATTGGATGACTTCTTATGGGCATTTGGGATATTGAGATCCAGGGCATTTTCACGCCTTCGTGGTCAAAATCTTGTTTTGATCCCTCTTGCAGACTTGATCAATCACAGTCCGAGCATAACCACAGAGGAGTACGCATGGGAGATTAAAGGAGCAGGTCTTTTCTCTAGGGATCAATTATTTTCTCTAAGGACCCCAGTTTCTGTGAAGGCTGGTGAGCAGGTTTTGATCCAGTATGATTTGGACAAGAGCAATGCTGAGTTGGCTTTGGACTATGGGTTCATAGAATCGAGGCCAAACCGGAATTCTTATACCCTAACACTAGAGATATCTGAGTCAGACCCTTTTTTTGGGGACAAGCTAGATATTGCTGAGTCCAATGGTCTTAGTGAAATTGCATACTTCGACATTGTATTGGGCCAATCTCTTCCAGCTGCAATGCTGCCCTACTTGCGACTGGTAGCGCTTGGGGGACCTGATGCTTTTCTCTTGGAATCTATTTTTAGAAACACTATCTGGGGGCACCTTGAATTGCCTGTGAGCCGTGCCAATGAGGAGCTCATATGCCAAGTGATCCAAGATGCCTGCAAATCTGCCCTTTCCGGTTATCTTACCACCATTGAAGAGGATGAGAAGTTGAAGGAAGAAGGGAATCTCCATCCAAGGCTTGAGATTGCTGTTGGGGTGAGAACAGGGGAGAAGAAGGTGCTGCAACAAATTGATGGGATTTTCAGGGAAAGGGAAAGGGAATTGGATCAGTTGGAATATTACCAAGAAAGGAGGCTTAAGGACCTCGGCCTGTGTGGGGAGCAAGGTGAAATCATCTTTTGGGAGTCCAAGTAA 1455 0.4653 MATLFTLVSSSSSVFFFPIKTLKNPPIIHSRRPPFSLTCLRSLETNPPPPVQTFWKWLFDQGVVSGKTPVKPGIVPEGLGLVAQRDIARNEAVLEVPKRFWINPDAVAASEIGSVCGGLKPWVSVALFLIREKLRDESPWRSYLDILPEYTNSTIYWSEEELVEIQGTQLSNTTLGVKEYVQSEFLKVEEEVILPHSQLFPFPVTLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPSITTEEYAWEIKGAGLFSRDQLFSLRTPVSVKAGEQVLIQYDLDKSNAELALDYGFIESRPNRNSYTLTLEISESDPFFGDKLDIAESNGLSEIAYFDIVLGQSLPAAMLPYLRLVALGGPDAFLLESIFRNTIWGHLELPVSRANEELICQVIQDACKSALSGYLTTIEEDEKLKEEGNLHPRLEIAVGVRTGEKKVLQQIDGIFRERERELDQLEYYQERRLKDLGLCGEQGEIIFWESK* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1109 484 Gene3D - 300 465 IPR036464 -
Vvi1g1109 484 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 300 465 - -
Vvi1g1109 484 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 48 298 - -
Vvi1g1109 484 Gene3D set domain protein methyltransferase, domain 1 49 299 - -
Vvi1g1109 484 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 484 IPR011192 GO:0009507|GO:0030785
Vvi1g1109 484 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 49 432 - -
Vvi1g1109 484 Pfam Rubisco LSMT substrate-binding 316 441 IPR015353 -
Vvi1g1109 484 CDD SET_RBCMT 61 299 IPR044431 GO:0016279|GO:0018022
Vvi1g1109 484 Pfam SET domain 78 283 IPR001214 GO:0005515
Vvi1g1109 484 ProSiteProfiles SET domain profile. 61 284 IPR001214 GO:0005515
Vvi1g1109 484 SUPERFAMILY SET domain 49 305 IPR046341 -
Vvi1g1109 484 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 307 481 IPR036464 -
Vvi1g1109 484 PIRSF RMT_SET 1 484 IPR011192 GO:0009507|GO:0030785
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1109 Vvi-Chr1 14007824 14010547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1109 51 240 NAC Transcription Factor Family AT3G56570 28.218 2.46e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi1g1109 SET 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1109 K00592 - vvi:100243771 954.125