Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1106 ATGAGTTGCAGAGACGACAATTCCGGTGGCCACTCCTCGACGTCTGCCGCCGGGAAAGACAAGGCCTCTGATAAGCAGAAGGAGAAGGCCCGGGTGAGCAGGACTTCTCTCATACTCTGGCACGCTCACCAAAACGACGCCGCTGCCGTCCGCAAGCTTCTCGAGGAGGATCAGTCTCTTGTTCACGCCAGGGATTATGATAGTAGGACTCCGCTTCATGTTGCTTCTCTCCATGGTTGGATCGATGTAGCCAAGTGTTTGATTGAGTTCGGCGCTGACGTCAACGCCCAAGATCGATGGAAGAACACGCCTCTTGCTGATGCAGAAGGAGCTAAAAAACACAGCATGATAGAGCTGCTAAAATCATATGGCGGCTTGTCTTATGGACAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCACCTCCTCTACCAAACAAGTGTGACTGGGAGATTGACCCTTCCGAGTTGGACTTCTCAAACTCTAGTATTATTGGAAAGGGCTCTTTTGGTGAGATTTTAAAGGCCTGTTGGCGTGGAACACCAGTAGCTGTGAAACGCATTCTTCCATCTCTTTCAGACGATAGATTGGTGATTCAGGATTTCAGGCATGAAGTTAATTTGCTCGTGAAGCTTCGTCACCCTAATATAGTCCAATTTCTTGGAGCTGTCACTGATAAGAAGCCGTTGATGTTAATTACAGAGTATTTGCGAGGGGGTGATCTTCACCAGTACCTCAAAGAAAAGGGCTCACTTAGCCCATCAACAGCTATTACCTTTGCCATGGATATTGCCAGAGGCATGGCTTATCTTCACAACGAGCCAAATGTCATAATTCACCGAGACCTAAAGCCAAGGAATGTTCTTTTGGTCAACACCGGCGCCGACCATTTAAAAGTTGGAGACTTTGGACTGAGCAAGCTCATCAAGGTTCAGAATTCTCATGATGTGTACAAAATGACTGGTGAAACAGGAAGTTACCGATACATGGCTCCTGAAGTTTTCAAGCACCGGAAATATGACAAGAAAGTTGATGTTTTCTCTTTTGCAATGATACTGTATGAGATGCTTGAAGGAGACCCACCATTGTCTAATTATGAACCTTATGAAGCAGCTAAATATGTGGCAGAAGGACAGCGGCCTATGTTCCGTGCGAAAGGATATATTACTGAACTGAAAGAGTTGACAGAGCAATGCTGGGCTGCTGACATGAACCACAGACCATCTTTCTTGGAAATTCTTAAGAGGCTTGAAAAGATCAAGGAAATTCTACCACCGGATCATCACTGGAACATATTTACTGCATAA 1308 0.4572 MSCRDDNSGGHSSTSAAGKDKASDKQKEKARVSRTSLILWHAHQNDAAAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKHSMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSSIIGKGSFGEILKACWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDKKPLMLITEYLRGGDLHQYLKEKGSLSPSTAITFAMDIARGMAYLHNEPNVIIHRDLKPRNVLLVNTGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLSNYEPYEAAKYVAEGQRPMFRAKGYITELKELTEQCWAADMNHRPSFLEILKRLEKIKEILPPDHHWNIFTA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1106 435 PRINTS Tyrosine kinase catalytic domain signature 234 247 IPR001245 GO:0004672|GO:0006468
Vvi1g1106 435 PRINTS Tyrosine kinase catalytic domain signature 272 290 IPR001245 GO:0004672|GO:0006468
Vvi1g1106 435 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672|GO:0006468
Vvi1g1106 435 ProSitePatterns Protein kinases ATP-binding region signature. 165 186 IPR017441 GO:0005524
Vvi1g1106 435 Gene3D Phosphorylase Kinase; domain 1 144 238 - -
Vvi1g1106 435 SUPERFAMILY Protein kinase-like (PK-like) 156 430 IPR011009 -
Vvi1g1106 435 PIRSF ILK 2 435 - -
Vvi1g1106 435 SUPERFAMILY Ankyrin repeat 38 125 IPR036770 -
Vvi1g1106 435 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g1106 435 FunFam Integrin-linked protein kinase family 238 433 - -
Vvi1g1106 435 FunFam serine/threonine-protein kinase STY46-like 152 238 - -
Vvi1g1106 435 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 44 421 - -
Vvi1g1106 435 SMART serkin_6 159 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1106 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Vvi1g1106 435 Gene3D - 4 133 IPR036770 -
Vvi1g1106 435 ProSiteProfiles Ankyrin repeat profile. 67 99 IPR002110 GO:0005515
Vvi1g1106 435 FunFam serine/threonine-protein kinase STY8 10 133 - -
Vvi1g1106 435 ProSiteProfiles Protein kinase domain profile. 159 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1106 435 MobiDBLite consensus disorder prediction 1 17 - -
Vvi1g1106 435 Pfam Ankyrin repeats (3 copies) 34 98 IPR002110 GO:0005515
Vvi1g1106 435 Gene3D Transferase(Phosphotransferase) domain 1 239 428 - -
Vvi1g1106 435 SMART ANK_2a 67 96 IPR002110 GO:0005515
Vvi1g1106 435 Pfam Protein tyrosine and serine/threonine kinase 162 417 IPR001245 GO:0004672|GO:0006468
Vvi1g1106 435 ProSiteProfiles Ankyrin repeat region circular profile. 67 99 - -
Vvi1g1106 435 CDD STKc_MAP3K-like 165 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1106 Vvi-Chr1 13949652 13973404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1106 1 435 MAP Kinase Kinase Kinase AT1G14000 82.648 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vvi1g1106 PK_Tyr_Ser-Thr 4.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1106 - - vvi:100242045 878.241