Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1100 ATGGAAGAAACAGATAAGTCCAATGCTAACAAGAAATGCACTCCCAAAGGCAGGAGTTTCAGTGGAAGGACCAACCCTAATGATCATCAGTTGTTTCAATACTCAAATCCTTTTAGGTTCTCTAACCAGAACCAGTACCGGAGCTACTCAGCTCTTCTTCCTCCGCCTCCTCCCATACCTCTGCAACCCACTGCAACTCCACCTCTGCCTCAAAACCAGAACTTTAGATCAAAAGCCCATTTGCAGAAACCTTCATGGAAGCATGACAACCCCCCTCGTGCCACCTCGTCGGATACCCAGGTCTCACTACTCACAGTATCAACAGAGGACACCGAGCGGCGAGCCAGTTTCTCCCCCAGAGGAGAAAATGGAAGGAAGGTCATGGCTGCCACACAAGCAATGGTGACTGCAAGAAGACCAGATTCTGGTGGAATAGAAGGGCCAGTTATATCTCTTCTTGCAAACCATTTTCTTGTCCAGTTTGATTCTTCGCAGAGAATATTCCATTATGATGTTGAGATCTCTCCAAATCCTTCTAAGGAAGTGGCTCGAATGATCAAGAGAAAACTAGTCGAGGAGAAGTCTGTTGAGCTCTCTGGTGCTCTTCCTGCCTTTGATGGGCGAAAGAATCTCTACAGCCCAGTCGAATTCCAAAATGACAGGCTTGAACTATTTATTGGTCTTCCCATTCCCACTAGCAAGTCATTGTCACCGTCAGGGGAAATAAAGGACGCCTTCCAAGAAAAGCATCCACAGATTAAGCTCTTCCGCATAAACATCAAACTTGTATCAAAATTTGATGGGAAGGAATTGAATAGCTACTTGAGCAAAGAGGGAGATGATTGGATTCCACTTCCTCAGGATTATCTTCATGCTCTAGATATTGTTTTGAGGGAGAGCCCAACTGAGAAGTGTGTGCCTGTGGGTAGATCACTGTACTCGAGTTCAATGGGAGGGACTAAAGAAATTGGAGGAGGGGCGGTTGGATTAAGAGGGTTCTTTCAGAGTCTTAGACCAACCCAGCAAGGACTTGCTCTCAATGTGGATTTTTCAGTGACCGCATTCCATGAGAGCATAGGAATAATACCCTACTTGCAGAAGCGTGTTGAGTTTCTTCGAGACCTTTCCCAGAGGAAGACAAGAGGTTTGACGGGCGAAGAAAGGAAAGAAGTGGAGAAGGCATTGAAGAATATCAGGGTCTTCGTATGTCATAGAGAAACTGTTCAGAGATATCGGGTGCATAGCTTAACGGAGGAAACTACGGAAAATCTCTGGTTCAAAGACAGGGATGGGAAGATTCTGAGGCTGGTGAATTACTTCAAGGATCACTATAGCTACGATATACAGTTCAGGAATTTACCATGCTTGCAGATTACAAGTAGCAAACCATGCTATCTTCCTATGGAGCTTTGTATGATCTGTGAAGGCCAAAAATTTCTTGGGAAGCTATCTGATGATCAAACTGCAAGAATACTTAAAATGGGCTGCCAGAGACCAAGAGAACGAAAAGCCATTATTGATGGGGTCATGAGAGGAGCGGTTGGGCCAACGAGTGGCAGCCAGGAAAGAGAATTCAAACTTGATGTTTCAAGAGAAATGACACGATTGAATGGGAGAGTTCTGGAACCTCCTAAGCTAAAACTTGGTGACGGTGGGCATGTAAGAGATCTAATTCCTTCCCGTCATGATCGGCAGTGGAACCTTTTGGACAGTCATGTGTTTGAAGGGACTCACATAGAAAGGTGGGCACTGATTAGCTTTGGTGGCACTCCAGATCAGAAATCTAATATTCCCAGATTCATAATCCAGCTATCTCAAAGGTGTGAACAATTGGGCATCCTTCTTAACAAAAACACCATCATGAGCCCCCAGTTTGAACCAATCCAAGTTCTCAACAATGTCTCCCTTTTGGAATCTAAACTCAAGAAAATCCACAGAACTGCATTGAATAATCTCCAGCTTCTTATGTGCATAATGGAGAGAAAGCACAAAGGGTATGCAGATTTGAAGCGAATTGCTGAGACCAGCATTGGGGTTGTAAGTCAGTGCTGCTTGTACCAAAATCTTGGGAAGTTGAGTTCACAGTTCCTGGCAAACCTGGCTCTCAAGATCAATGCCAAAGTCGGAGGATGCACTGTTGCCTTGTACAATTCATTACCTTCCCAGATCCCGCGCCTCCTTCGCCCCGATGAGCCAGTCATCTTCATGGGTGCTGATGTGACTCATCCTCATCCGCTTGATGATTTCAGCCCCTCTATTGCAGCCGTGGTTGGGAGCATGAACTGGCCATCAGCTAACAAGTATGTTTCAAGAATGAGGTCCCAGACCCATCGTCAAGAAATTATCCAGGATCTTGGTGCTATGGTCGGAGAAATACTGGATGATTTTTATCAGCAAGTTTCCCAACTCCCCAAGAGGATAATTTTTTTCAGGGATGGAGTCAGCGAAACCCAGTTCTATAAGGTGCTCCAAGAGGAGTTGCAAGCGATAAGAGTGGCTTGCTCTAGATTTCCCAGTTACAGACCTCCCATTACTTTTGCAGTGGTTCAGAAGAGGCACCACACGAGATTGTTTCCGAATGAAAGCAATCCATCTTCCATTGGAAACCAGTTCTCGGACGACAACATCCCCCCAGGGACAGTTGTTGATGCTGTGATTACTCACCCAAGGGAATTTGATTTCTATCTTTGTAGCCATTGGGGTGTGAAGGGAACAAGCCGACCAACCCATTATCATGTCTTATGGGATGACAACCATTTCACTTCTGATGAACTCCAGAAGCTGGTTTACAATCTATGCTACACATTTGTGAGATGTACCAAACCGGTTTCGTTGGTGCCCCCAGCTTACTACGCCCACCTGGCTGCATACCGAGGCAGACTATACCTGGAGCGTTCAGAATTCACAGCATTGGCTAGAAGCACTAGCGCACTCTCCCGAGCAGCCCCTCCTAAGACAGCTCCTCTGCCCAAACTTAGCGAGAATGTTAAGAAACTGATGTTCTATTGCTGA 3012 0.4572 MEETDKSNANKKCTPKGRSFSGRTNPNDHQLFQYSNPFRFSNQNQYRSYSALLPPPPPIPLQPTATPPLPQNQNFRSKAHLQKPSWKHDNPPRATSSDTQVSLLTVSTEDTERRASFSPRGENGRKVMAATQAMVTARRPDSGGIEGPVISLLANHFLVQFDSSQRIFHYDVEISPNPSKEVARMIKRKLVEEKSVELSGALPAFDGRKNLYSPVEFQNDRLELFIGLPIPTSKSLSPSGEIKDAFQEKHPQIKLFRINIKLVSKFDGKELNSYLSKEGDDWIPLPQDYLHALDIVLRESPTEKCVPVGRSLYSSSMGGTKEIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGIIPYLQKRVEFLRDLSQRKTRGLTGEERKEVEKALKNIRVFVCHRETVQRYRVHSLTEETTENLWFKDRDGKILRLVNYFKDHYSYDIQFRNLPCLQITSSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIDGVMRGAVGPTSGSQEREFKLDVSREMTRLNGRVLEPPKLKLGDGGHVRDLIPSRHDRQWNLLDSHVFEGTHIERWALISFGGTPDQKSNIPRFIIQLSQRCEQLGILLNKNTIMSPQFEPIQVLNNVSLLESKLKKIHRTALNNLQLLMCIMERKHKGYADLKRIAETSIGVVSQCCLYQNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLLRPDEPVIFMGADVTHPHPLDDFSPSIAAVVGSMNWPSANKYVSRMRSQTHRQEIIQDLGAMVGEILDDFYQQVSQLPKRIIFFRDGVSETQFYKVLQEELQAIRVACSRFPSYRPPITFAVVQKRHHTRLFPNESNPSSIGNQFSDDNIPPGTVVDAVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDDNHFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSEFTALARSTSALSRAAPPKTAPLPKLSENVKKLMFYC* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1100 1003 ProSiteProfiles PAZ domain profile. 366 475 IPR003100 GO:0005515
Vvi1g1100 1003 FunFam Protein argonaute 7 353 479 - -
Vvi1g1100 1003 SUPERFAMILY PAZ domain 353 511 IPR036085 GO:0005515
Vvi1g1100 1003 SMART Piwi_a_2 654 964 IPR003165 GO:0003676
Vvi1g1100 1003 Pfam Argonaute linker 1 domain 307 356 IPR014811 -
Vvi1g1100 1003 Pfam N-terminal domain of argonaute 150 297 IPR032474 -
Vvi1g1100 1003 ProSiteProfiles Piwi domain profile. 654 964 IPR003165 GO:0003676
Vvi1g1100 1003 MobiDBLite consensus disorder prediction 89 112 - -
Vvi1g1100 1003 Gene3D - 540 716 - -
Vvi1g1100 1003 CDD PAZ_argonaute_like 369 474 - -
Vvi1g1100 1003 MobiDBLite consensus disorder prediction 1 122 - -
Vvi1g1100 1003 MobiDBLite consensus disorder prediction 51 67 - -
Vvi1g1100 1003 FunFam protein argonaute 10-like 722 1003 - -
Vvi1g1100 1003 MobiDBLite consensus disorder prediction 13 50 - -
Vvi1g1100 1003 FunFam Argonaute 10 540 716 - -
Vvi1g1100 1003 Pfam PAZ domain 370 491 IPR003100 GO:0005515
Vvi1g1100 1003 CDD Piwi_ago-like 523 963 IPR045246 -
Vvi1g1100 1003 SMART PAZ_2_a_3 366 506 IPR003100 GO:0005515
Vvi1g1100 1003 Pfam Piwi domain 655 961 IPR003165 GO:0003676
Vvi1g1100 1003 SUPERFAMILY Ribonuclease H-like 642 964 IPR012337 -
Vvi1g1100 1003 Gene3D paz domain 361 478 - -
Vvi1g1100 1003 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 144 966 - -
Vvi1g1100 1003 Gene3D - 727 1003 IPR036397 GO:0003676
Vvi1g1100 1003 SMART DUF1785_2 306 358 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1100 Vvi-Chr1 13829611 13833472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1100 129 1003 Eukaryotic Initiation Factors Gene Family AT1G48410 40.870 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1100 K11593 - vvi:100264433 1985.3