Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1084 ATGGGGAGGTCTCCATGTTGTGAGAAGGTGGGGTTGAAGAAAGGTTCATGGACTCCCGAAGAAGACCAGAAGCTCATGTCCTACATTGAGGAACACGGCCATGGGAGTTGGCGTGCCTTGCCTGCCAAAGCAGGGTTGCAGAGATGTGGGAAGAGCTGCAGATTGAGATGGACCAATTATCTCAGGCCTGATATCAAAAGAGGCAAGTTTAGCTTGCAGGAAGAACAGACCATCATTCAACTTCACGCTCTTCTTGGAAACAGGTGGTCGGCTATAGCAACCCACTTGCCCAAGAGAACGGACAATGAGATTAAGAACTACTGGAATACGCATTTGAAGAAAAGATTAACCAAAATGGGCATCGACCCAGTTACCCACAAGCCCAAAAGCTATGCCCTCGGCTCAGCCACAGGTCAGTCCAAGGACGCAGCAAATCTCAGCCACATGGCTCAGTGGGAGAGCGCCAGACTGGAAGCAGAAGCCAGATTCGTCCGAGAATACAAGCTCTCACCCCATCCCTTCCAACACCAGTACAAGCAAGGGCTCTCCGCCACCGCTCTGTCCATTACCCACTCCTTGGCTCCACCCAAAACCCTAGATGTAGTGAACGCATGGCAGGGCCTGTGGTCATCTGGGTCAACCAATGATTGTGCAGTTTTCGGAGACACTCTGTTCAACTCGTCAGAGAATGCACTACCAGCTGCGCTCCCCAGCAGTACTCTAGGACTAGGCGTCAATGAGAACTCCATGGAAAAGGGTGAAAATGATTGGAAGCACTGCTTTGAAAGACAGAACAAAGTGCCAGAGTTTATCAAAGATAACGCAACCCCTTTCCCTGACATGCAATACTCCACGGACGAGTCTACATGGATTGCGGACTCTGTGGGTAACAATAATATTGTTATCTCCTGTGCCACTTTCAATGTCGACGGTTTCTCTCATCACCTCTTGCCTGAGAATTCCTCCTTGTCCTTTGGGGAAGACTCCGATAATGCCAACGCAAACTGCACTGCTGGATCAGCTGGTGGTGGTTTTGAAGAAAACAACCATTACTGGAACAACATTATTAGCTTACTTGATTCTTCTTCTGCTTATTATTCCTTGGAAAATGTCTAG 1116 0.4884 MGRSPCCEKVGLKKGSWTPEEDQKLMSYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKSYALGSATGQSKDAANLSHMAQWESARLEAEARFVREYKLSPHPFQHQYKQGLSATALSITHSLAPPKTLDVVNAWQGLWSSGSTNDCAVFGDTLFNSSENALPAALPSSTLGLGVNENSMEKGENDWKHCFERQNKVPEFIKDNATPFPDMQYSTDESTWIADSVGNNNIVISCATFNVDGFSHHLLPENSSLSFGEDSDNANANCTAGSAGGGFEENNHYWNNIISLLDSSSAYYSLENV* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1084 371 CDD SANT 69 112 IPR001005 -
Vvi1g1084 371 Gene3D - 13 66 - -
Vvi1g1084 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi1g1084 371 CDD SANT 16 61 IPR001005 -
Vvi1g1084 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi1g1084 371 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi1g1084 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi1g1084 371 SMART sant 13 63 IPR001005 -
Vvi1g1084 371 SMART sant 66 114 IPR001005 -
Vvi1g1084 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi1g1084 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi1g1084 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
Vvi1g1084 371 Gene3D - 69 116 - -
Vvi1g1084 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi1g1084 371 FunFam MYB transcription factor 69 116 - -
Vvi1g1084 371 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1084 Vvi-Chr1 12653000 12655438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1084 1 362 MYB Transcription Factor Family AT3G01140 51.087 1.54e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g1084 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1084 K09422 - vvi:100251684 769.229