Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1079 ATGGATGGAAAAGGCAGCTCTCAACTTCCTCCCGGTTTTAGATTCCACCCCACCGACGAGGAACTCATCATGTATTACCTCAAAAACCAAGCCACTTCCAAGCCATGCCCCGTATCCATTATCCCCGAAGTGGATATCTACAAATTCGAGCCTTGGGAATTGCCTGAGAAGGCGGAATTTGGAGAAAATGAGTGGTATTTCTTTAGCCCGCGTGACCGTAAGTATCCCAATGGGGCTAGACCCAACCGAGCTACAGTGTCCGGCTACTGGAAAGCCACAGGGACAGACAAGGCAATCTACAGTGGGGCTAAGTATGTGGGGGTGAAAAAGGCTCTTGTGTTCTACAAGGGTAGGCCTCCTAAGGGCATTAAGACCGATTGGATTATGCATGAATATCGCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGATTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAATTTTGGAAGAGAAAGAAGAAAATTTAGGTCCCCAAATACCCGTTACAAATTCAGATGATGGCGGTGAGCAGCACCAAGTGAAATTTCCAAGGACTTTTTCCCTTGCTCATTTATTGGACATGGAATACTTGGGTCCAATTTCACAACTTCTAGGTGACAATTCATACCATTCAGCCTTTGATTTCCAAGGCACCATAAGCAATATTGCCGGAACCGACCCCCCTGGCGTGGACAAATTCGAGTTATTCCAACTGCCATGCCAATACAACGATTCAACCAAGTTCCAAGTGAATCAGAATCACATTCCGAACCAGCCTCTATTTGTGAACCCAGTGTATGAATTTCAGTGA 849 0.4617 MDGKGSSQLPPGFRFHPTDEELIMYYLKNQATSKPCPVSIIPEVDIYKFEPWELPEKAEFGENEWYFFSPRDRKYPNGARPNRATVSGYWKATGTDKAIYSGAKYVGVKKALVFYKGRPPKGIKTDWIMHEYRLSDSRPRPKKHNGSMRLDDWVLCRIYKKKHVGRILEEKEENLGPQIPVTNSDDGGEQHQVKFPRTFSLAHLLDMEYLGPISQLLGDNSYHSAFDFQGTISNIAGTDPPGVDKFELFQLPCQYNDSTKFQVNQNHIPNQPLFVNPVYEFQ* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1079 282 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Vvi1g1079 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 181 - -
Vvi1g1079 282 FunFam NAC transcription factor 18 165 - -
Vvi1g1079 282 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Vvi1g1079 282 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Vvi1g1079 282 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1079 Vvi-Chr1 12442134 12443186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1079 1 216 NAC Transcription Factor Family AT1G69490 67.544 7.89e-113 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi1g1079 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1079 - - vvi:104879728 597.43