Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1078 ATGCATGACTGGCTTGTCAAATACTTGTCCAAGTCAAGAACTGTTGCGGTCCCCATGCCTTTCACTACTTATACCTACATTGCAGATCCTGCCAATGTAGAACATGTCCTCAAGACCAACTTTGCCAATTATCCCAAGGGTGAAGTGTATCATTCATACATGGAAGTACTGCTTGGAGATGGGATTTTCAATGTAGATGGTGAGCTCTGGAGGAGGCAGAGGAAGACTGCAAGCTTCGAGTTTGCATCCAAGAACTTGAGGGATTTCAGCACTATTGTATTCAGAGAGTATAGCCTCAAGCTCTCTGCTATTCTTAGTGAAGCCTCTTTCCACAACCGAGAAGTAGACATGCAGGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTCGTGCTTTTGACACTGCAAACATCATTGTCACACTTCGCTTCATCGACCCACTATGGAAAATAAAGAAATTTCTTAATGTAGGTTCAGAATCTCTGCTTGATAAGAGCATTAAAGTCATCGATGATTTCACATACTCTGTTATTCGTACAAGGAAAGCAGAGATAGATCAAGCTCGTAAATCGCATGACGATAAGGCATCCCATCCTGACCATTCTCAGATAAAGCATGATATATTATCAAGATTCATCGAGTTAGGTGAAAACCCAGAAAGCAATTTAACCGACAAAAGCCTCCGAGATGTAGTGCTCAACTTTGTGATAGCTGGCCGTGATACAACAGCAACAACTCTCTCATGGGCTGTGTACATGATGATGGCTCATGCCCATGTAGCTGACAAGCTTTACTCAGAGCTCAAAACTTTTGAAGAAGATCGAGCAAAAGAAGATAAAATTTCACTGCTCCATTATGACATAGAGGACTCCAAGTCATTCAATCAAAGAGTGACCCAATTTGCAAGACTCTTGACCTATGATTCATTGGGGAGATTACATTACTTACATGCAGTGATCACAGAAACACTACGCTTGTACCCTGCAGTCCCTCAGGACCCCAAGGGCATATTGGAGGACGATGTTTTGCCAGATGGAACCAGAGTAAAAGCAGGAGGCATGGTGACTTACGTCCCCTACTCAATGGGTAGAATGGAGTACAACTGGGGTCCTGATGCAACGTTATTCAAGCCTGAGAGATGGCTTAAAGAGGGGTTCTTCCAAAATGCATCTCCTTTCAAGTTCACTGCATTCCAGGCTGGTCCAAGGATATGCCTTGGGAAGGACTCGGCATATCTCCAAATGAAGATGGCAATAGCTTTATTGTGTAGGTTTTTCAAATTCAATTTAGTACAAGGGCACATAGTGAAGTACAGGATGATGACAATTTTATCTATGGCCAATGGATTAAAGGTTACCGTCTCCAGAAGATCTTAA 1440 0.4271 MHDWLVKYLSKSRTVAVPMPFTTYTYIADPANVEHVLKTNFANYPKGEVYHSYMEVLLGDGIFNVDGELWRRQRKTASFEFASKNLRDFSTIVFREYSLKLSAILSEASFHNREVDMQDLLMRMTLDSICKVGFGVEIGTLAPNLPENCFARAFDTANIIVTLRFIDPLWKIKKFLNVGSESLLDKSIKVIDDFTYSVIRTRKAEIDQARKSHDDKASHPDHSQIKHDILSRFIELGENPESNLTDKSLRDVVLNFVIAGRDTTATTLSWAVYMMMAHAHVADKLYSELKTFEEDRAKEDKISLLHYDIEDSKSFNQRVTQFARLLTYDSLGRLHYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTRVKAGGMVTYVPYSMGRMEYNWGPDATLFKPERWLKEGFFQNASPFKFTAFQAGPRICLGKDSAYLQMKMAIALLCRFFKFNLVQGHIVKYRMMTILSMANGLKVTVSRRS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1078 479 PANTHER CYTOCHROME P450 1 472 - -
Vvi1g1078 479 Pfam Cytochrome P450 19 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS P450 superfamily signature 259 276 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 FunFam Alkane hydroxylase MAH1 1 479 - -
Vvi1g1078 479 CDD CYP86A 13 471 - -
Vvi1g1078 479 Gene3D Cytochrome P450 1 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 SUPERFAMILY Cytochrome P450 2 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS E-class P450 group I signature 248 265 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS E-class P450 group I signature 268 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1078 479 PRINTS E-class P450 group I signature 338 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1078 Vvi-Chr1 12438188 12440338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1078 1 479 Cytochrome P450 AT1G69500 78.497 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1078 K20495 - vvi:100258457 930.628