Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1062 ATGCAAAATCAAGATATGAGCTTGGTTCTGTCAACTGATGCAAAGCCCAGGCTAAAATGGACTCCGGAACTTCATCATCGGTTTGTTGAAGCTGTGGCTCACCTTGGAGGGCCAGACAAGGCAACACCGAAGACTTTGATGAGGGTGATGGGAGTACCTGGACTGACTCTGTACCACTTGAAGAGTCATTTACAGAAATATAGGCTGGGGAAAAGTCAGCAGGCAGAAACCTTCAGTGACAACAATCAAGAAGATTACTGCGAGAATCAGAACAGAGAGATTCATTTTGATAGGGAAACCGGTGATGGAACTCAGAATCCGATTAATGAAAGCTTGCAGATAGCTCAGGCTCTACAAGTGCAATTGGAGGTGCAGAGGAAACTTCATGAACATATTGAGGTGCAGAGACATTTGCAGCTGCGTATTGAAGCCCAAGGAAAGTATTTACAGTCAGTATTAAAGAAAGCTCAAGAAACGCTTGCTGGCTATAATTCTTCTTCTGTAGGGGTGGAACTGGCAAAAGCTGAACTCACTCAGCTGGTCTCTATTTTTGACACTGGGTGCCCAAGTTCTTCATTCTCAGAATTAACAGAAACAGGAGGTTCTGGCTTAAAGGATAAAGAGAGGAAACCAATGAGGGGCACAGGATGTTCCCTGGAAAGCTCCTTAACATCCTCAGAGAGCTCTGGGAGAAAAGAAGAGAAGCAACCGAAGAATGAGAATGGGAACACCAATAAGTGTACTTCCATGGCTCCTACATTAATGGAGATCCATCCTGGAGATAGCCAAGCTTGGAAGAGTGGTTCGAGCAATCAAGCTAGTGGAAGAAAGAGAAACGGAAGCACCATTTCTGATGGAAATTGTGTGGAGCAGCCCTCTGGTAAAAGATCACCAACCTATGCAGGGAAAACTGGTGACCGGTTGAGAAAATTAGGATTATTAGAGACGCTTGATCTGAATACCCAATATCAGATCGACATTGATTCTGCTCCAAAAGCAATAGATTTGAACTGCAAGGAATAG 1023 0.4418 MQNQDMSLVLSTDAKPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQKYRLGKSQQAETFSDNNQEDYCENQNREIHFDRETGDGTQNPINESLQIAQALQVQLEVQRKLHEHIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYNSSSVGVELAKAELTQLVSIFDTGCPSSSFSELTETGGSGLKDKERKPMRGTGCSLESSLTSSESSGRKEEKQPKNENGNTNKCTSMAPTLMEIHPGDSQAWKSGSSNQASGRKRNGSTISDGNCVEQPSGKRSPTYAGKTGDRLRKLGLLETLDLNTQYQIDIDSAPKAIDLNCKE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1062 340 Gene3D - 14 72 - -
Vvi1g1062 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Vvi1g1062 340 MobiDBLite consensus disorder prediction 190 307 - -
Vvi1g1062 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 269 IPR044848 GO:0003700
Vvi1g1062 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
Vvi1g1062 340 FunFam Myb family transcription factor 14 72 - -
Vvi1g1062 340 Pfam Myb-like DNA-binding domain 17 68 IPR001005 -
Vvi1g1062 340 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
Vvi1g1062 340 MobiDBLite consensus disorder prediction 263 298 - -
Vvi1g1062 340 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1062 Vvi-Chr1 12171710 12173208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1062 6 297 G2-like Transcription Factor Family AT1G69580 52.614 2.93e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi1g1062 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1062 - - vvi:100255052 674.47