Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1061 ATGGCTTCCGAATCTGAGGCTTCAGGGGCATCGTCTAGTGCATCTTTTCTTGAGAGGCTCATAAGTTCAAGGAACAGAGACCTCTCCATGTTCATACCCTTCATCTTGGGCTTCACTGACACAACCACAAGGCAAGAATCGGATGACCCAGATGATGAAACCACTGATACGCCAACCCCTCGCGACAGAATCATCCTCATCAACCCATTCACCCAAGGGATGATCGTGATTGAGGGCAATTCGAGCTTTGATTCTCTGCTGAGAGAGCTGGCCAGCAAGGGTGGACAGCCCCCGGCCACCAAGGCCTCGATTGAAGCCATGCCGTCGGTGGAGGTTGGAGGAGATGATGGGGAGTGTGTGATTTGTTTGGAAGAGTGGAAGGTGGGTTGTGTGGCCAAGGAGATGCCATGTAAGCATAAATTTCATGAGAATTGTATAGTGAAGTGGTTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGCATAAGATGCCTGTTGATGAGGAGGATTTGGGGAAGAAGAGAGAGGGGAGTGTTGGTGATGAAGAAGGGAGGGGGAGGAGGAGGGTTGAGAGGGAGATTTGGGTGAGCTTTTCCTTCAACAGTAATAGCAGAAGAAATGATTCAAATCAAACGCCTTCAACTGCTTCCCACAATGATTCTTCTTCCAGTCCAACACCAGATGATCATGTAATGGAGAATTAA 702 0.4915 MASESEASGASSSASFLERLISSRNRDLSMFIPFILGFTDTTTRQESDDPDDETTDTPTPRDRIILINPFTQGMIVIEGNSSFDSLLRELASKGGQPPATKASIEAMPSVEVGGDDGECVICLEEWKVGCVAKEMPCKHKFHENCIVKWLGIHGSCPVCRHKMPVDEEDLGKKREGSVGDEEGRGRRRVEREIWVSFSFNSNSRRNDSNQTPSTASHNDSSSSPTPDDHVMEN* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1061 233 FunFam E3 ubiquitin-protein ligase RNF181 87 166 - -
Vvi1g1061 233 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Vvi1g1061 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 166 IPR013083 -
Vvi1g1061 233 MobiDBLite consensus disorder prediction 200 233 - -
Vvi1g1061 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 40 164 - -
Vvi1g1061 233 Pfam Ring finger domain 118 160 IPR001841 -
Vvi1g1061 233 SMART ring_2 119 159 IPR001841 -
Vvi1g1061 233 SUPERFAMILY RING/U-box 114 166 - -
Vvi1g1061 233 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1061 Vvi-Chr1 12168445 12169146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1061 1 207 C3H Transcription Factor Family AT1G26800 53.589 4.30e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1061 - - vvi:100255065 423.705