Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1057 ATGGAGGGTCAGAAAATAGAGAGCATGGAGAGCCAAAACCAGCTCCCACAACAGCAGTTGAGCAGAGGCACCACCTTCCTCAGGACTTGCTTCAATGGTATCAATGCCTTATCAGGTGTTGGGATATTATCAATTCCATATGCTCTTTCCCAAGGAGGGTGGCTGAGCCTCATACTTCTATTTCTCGTAGCCATTCTCTGTTGGTATACGGGGCTTCTTCTACGACGATGCATGGATGCACACCCACTTATCAAAACATATCCCGATGTAGGCGAACTAGCTTTTGGGATGAAAGGGAGAACCATGATAGCTCTGTTTATGTACCTGGAGCTGTATTTAGTTGCAGTAGAATTTCTAATATTAGAAGGTGATAATTTGGAGAAGTTGTTCCCAACCATGAGTTTTAAAGTAGCAGGCCTGAAGATTGGAGGAAGACAAGGCTTTGTTCTTCTAGCTGCCCTTGTGATCTTGCCAACTACGTGGCTGAGGAGTTTGGGGTTACTAGCCTATCTTTCAGCTGGTGGGGTTTTTGCTTCAGTGATTGTGGTTGGTTGTGTTTTCTGGGCAGGTGCAGTTGATGGTGTAGGATTCCATGAAAGGGGTATGGTTCTGAATTGGAGTGGGCTGCCAACTACCATAAGCTTGTTTGTCTTCTGTTATTGTGGTCATGCAATTTTTCCCACACTCTGCACTTCCATGAAGGACAAAAGCCAATTCTCCAAGGTTCTACTAATCTGCTTTGCTCTAAGCACAATCAACTATGGATCAATGGCCATTCTAGGCTACCTGATGTTTGGAGAAAATCTGAGGTCTCAAGTGACTCTAAATCTTCCAACGGGAAAAATGAGTTCCAAACTAGCAATATATACAACACTAATCAATCCCCTGACCAAGTATGGGATAATAATTACTCCAATTGCCAATGCTATTGAGGACACATTTTCATTCCACAACAGCCGACCCATCAGTATCACCATCAGAACAGCGCTGGTGATCAGCACTGTCGTCGTGGCCCTAACAGTCCCATTTTTCGGCTATATAATGGAATTTATTGGTGCATTTCTGAGTGTGACTGTCTCAATGTTGTTCCCATGCGTATTTTACCTTAAGATTAACAAAGCTTCTCGAAGTTTTGGGTTAGAATTGATTGCTATCATTGCCATTTTGGCACTGGGCTCCTTCGTTGCTGTAACGGGTACTTATACTTCTCTCAGACAAATTATAAACCGCCTCTGA 1236 0.4353 MEGQKIESMESQNQLPQQQLSRGTTFLRTCFNGINALSGVGILSIPYALSQGGWLSLILLFLVAILCWYTGLLLRRCMDAHPLIKTYPDVGELAFGMKGRTMIALFMYLELYLVAVEFLILEGDNLEKLFPTMSFKVAGLKIGGRQGFVLLAALVILPTTWLRSLGLLAYLSAGGVFASVIVVGCVFWAGAVDGVGFHERGMVLNWSGLPTTISLFVFCYCGHAIFPTLCTSMKDKSQFSKVLLICFALSTINYGSMAILGYLMFGENLRSQVTLNLPTGKMSSKLAIYTTLINPLTKYGIIITPIANAIEDTFSFHNSRPISITIRTALVISTVVVALTVPFFGYIMEFIGAFLSVTVSMLFPCVFYLKINKASRSFGLELIAIIAILALGSFVAVTGTYTSLRQIINRL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1057 411 PANTHER OS05G0424000 PROTEIN-RELATED 32 387 - -
Vvi1g1057 411 Pfam Transmembrane amino acid transporter protein 23 401 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1057 Vvi-Chr1 12125592 12127646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1057 9 408 Amino Acid or Auxin Permease AAAP Family AT3G28960 52.488 5.38e-150 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1057 K15015 - vvi:100256814 773.467