Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1056 ATGCGACGATCGAATGCTAAAAGGCCGGAGAAGATGGAACAGTTGAAGCTTCAAATGCGGCCGAACGCCACTGCACGAGCCCAGAAAAACGCCACCAGGAGCAACCTAGTAGTCCTCATCCTGCTCGCCACCGTGATTGCCGCCTTCTTCCTTTTGTTGGTCCTTGTCTGCAATTCACGGAATTCGATGAGGAGGGGCAAGAAGTACGGGATCGTGATCGACGGTGGAAGTACCGGCACCCGGATCCACGTGTTCGGATTCGAGTTGGACGGTGGCGGGAGACCCGTATTTGATTTCGGTAAGAAAGGTTTGGGGTCAATGAGGGTGAGCCCTGGTTTGTCTTCGTATGCGGAGGATCCGAATCGAGCGGGTGGATCGTTGGTGGAGCTTCTAGAGTTTGGTAAGAGTAGGGTTCCCAAGGAGCACTGGGGAGACACTGAAATTAGGCTGATGGCCACTGCGGGGTTGAGGAGGCTGGAATTGCGTGTCCAGGAAGCGATTCTGGAGTCTTGTAGACGGGTTCTTCGGGTATCAAGTTTTCAATTTCGGGACAGTTGGGCTTCTGTTATTACTGGGTCGGATGAAGGAATATATGCTTGGGTTGTTGCAAATCATGCACTTGGCAGTCTTGGAGGTGATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGGGATCCTACCTTCCAAATGCTGCTGAATCTCTTCAGAAAGGAATATTAATAGATCCTTGCACTCCTAAAGGGTATTCTTTGGATGGAAAAAATGAATACTCATCTGCTATTCATGCCCAGGGTAACTTCTCAGAGTGTCGAGCTGCTGCATTAACCTTGTTACAGAAGGGAAAAGAGAGATGTTCATATCATCACTGCTTAGGTTCAACTTTTATGCCCAAGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGACAACATTTCTGTGAAGAGGATTGGTCAAAGTTGAAAAGGAAGTATTATTCATTCAATGAGGAAGATTTATTGCACTATTGCTTCTCTTCAGCATATATTGTGGCTTTTCTTCATGATAGTCTTGGAATTGCTTTGGATGATGAAAGGATTGGATACGCAAATCAGGTGGGAGATATCCCACTGGATTGGGCCTTAGGAGCTTTCATCTTGCAGAGCACAACCAACTTGGAAGCAGAGCACTCTGATTGGATCACCACGGTTGTCAGTGATGAGTCCCCAACCTTGCTCTCTCTAGTTGTCATCTTAATCATATTGATGTTTACAGTTTGGTCTATATCAAAGTGTAAGAAGCCCCAGTTGAAGACGATCTATGATTTAGAGAAAGGACGGTATATAGTCACTCGAATCAATAGATGTTCATAG 1590 0.4579 MRRSNAKRPEKMEQLKLQMRPNATARAQKNATRSNLVVLILLATVIAAFFLLLVLVCNSRNSMRRGKKYGIVIDGGSTGTRIHVFGFELDGGGRPVFDFGKKGLGSMRVSPGLSSYAEDPNRAGGSLVELLEFGKSRVPKEHWGDTEIRLMATAGLRRLELRVQEAILESCRRVLRVSSFQFRDSWASVITGSDEGIYAWVVANHALGSLGGDPRETTGIIELGGASAQVTFVSSEPVPPEFSHTLRFGNVTYNLYSHSLLDFGQNVALESLQKSLFSTDLMGSYLPNAAESLQKGILIDPCTPKGYSLDGKNEYSSAIHAQGNFSECRAAALTLLQKGKERCSYHHCLGSTFMPKLQGKFLATENFFYTSKFFGLGSRAFLSDLTVAGQHFCEEDWSKLKRKYYSFNEEDLLHYCFSSAYIVAFLHDSLGIALDDERIGYANQVGDIPLDWALGAFILQSTTNLEAEHSDWITTVVSDESPTLLSLVVILIILMFTVWSISKCKKPQLKTIYDLEKGRYIVTRINRCS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1056 529 Gene3D Exopolyphosphatase. Domain 2 191 446 - -
Vvi1g1056 529 Gene3D - 68 458 - -
Vvi1g1056 529 CDD NBD_sugar-kinase_HSP70_actin 71 264 - -
Vvi1g1056 529 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 32 467 IPR000407 GO:0016787
Vvi1g1056 529 Pfam GDA1/CD39 (nucleoside phosphatase) family 66 461 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1056 Vvi-Chr1 12090979 12106229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1056 21 467 Nodulin-like Gene Family AT4G19180 27.664 1.06e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1056 K01510 - vvi:100244785 1012.68