Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1054 ATGATTTTCAAGAACAATAGCATTGAGCTCCTCTTCTTGGCTAGTATCATTCTTCTCAGTATCGCAGCTGAAAAATCCAGACTGCTGGTTGGAGAAGAAAATTCATCAAAAAGTTGGACAGGGAAGTTTACAGTCTTTAACTGCTTTGACGTGGGCACTGGGACGATAGCATGTGTGGTCAAGGAGGTTGTGAGGATCTATCTACACTATATCAGGGCGGTTCATGTACGAAAAGTAAGAGCAGAGGCAGAAACGGAAGCACTGAATGAGGGATTCTCACAGGGACTGAGCTATGAAGATTCCAGCAAGCAGGCATGTGAAAAGGGAGATGCAGCAGCAAGGAGGGCATATCTCCAAGCCAAGCACATCATGGGGCATTTGATTTCCTCAGGATGGGACGTTTTTGAAACTCTGTACGTTGGGGGCACCATTACAGAAGGGTTAATTAGGGGCAGTGGTACACTGTTGGGATCACATGCCGGTGGCTACATTGGAGAGCAGAGGCTTGGGTGGATTGGGTCTCTTGTTGGAAGCCACATGGGGAGTTGGGTTGGAGGAAGAATAGGTCTAATGGCTTATGATGTGGGGAATGGAGTTCAGTACTTGCTTCAACTTGTTGGTAAAGAACATAGCTCTAATGGAAGCTCTAGTTCGAGGGGTTCTTTGCTTTACCAACAACACTTCTCACAGGGAGATTTTTCTGGTCAGCCAAACACCTCGTTTCCAGGCATTGTCCGGGTTTGTTTGCTTGAGGAGGGAAAAAAAATGAGTGATCACCTGGTACTGTATGTGGACCGTCCGATAAGACCTGTGACCTCACAATCCGTGCAAGAGGCCGGGGCGGAAACTGCTGGTCCATCTACTTCTGTCGCTGATGATAAGAGGGTTGAGGAAAATGAAGGTTCAAATGAAGAAGAGCCGTTTCTTAAGATGATGGAATGCCGCATTTGCCAAGAGGAAGATAGCCTTGAGAATCTGGAGACGCCTTGTGCTTGTAGCGGCAGTCTAAAGTATGCTCATAGGAAGTGTGTTCAACGATGGTGCAATGAGAAAGGAGACATAATTTGTGAGATCTGCCATCAGCCTTACCAACCGGGCTACACTGCTCCTCCCCCACCACCTCATCCTGAAGATACTGCTATTGATATTGGTGGAGGCTGGACAATCTCTGGCACTCCTTTGGATTTGCGTGATCCTCGCCTTTTGGCAATGGCAGAGGCAGAGCGGCATTTCTTGGAAGCTGAGTATGATGAGTATACTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATACTGATGGAGATGATGACACATCAACTTTTTTCTCTCTTTTCTTGCTTCGGGCTGCTGGGTTTTTACTGCCCTGCTACATTATGGCCTGGGCCATTAGTATCTTGCAGCGTCGAAGACAGAGGCAGGAGGCTGCAGCATTGGCTGCAACACAAGTTGCTTTTGTGCTGCAATCAGGACAACGAAGGGGTCTGCAGTTCACAGTTGCACCAGCACATGTAGTAGCTCCACCCCAGGAGCCTGCTTAA 1605 0.4785 MIFKNNSIELLFLASIILLSIAAEKSRLLVGEENSSKSWTGKFTVFNCFDVGTGTIACVVKEVVRIYLHYIRAVHVRKVRAEAETEALNEGFSQGLSYEDSSKQACEKGDAAARRAYLQAKHIMGHLISSGWDVFETLYVGGTITEGLIRGSGTLLGSHAGGYIGEQRLGWIGSLVGSHMGSWVGGRIGLMAYDVGNGVQYLLQLVGKEHSSNGSSSSRGSLLYQQHFSQGDFSGQPNTSFPGIVRVCLLEEGKKMSDHLVLYVDRPIRPVTSQSVQEAGAETAGPSTSVADDKRVEENEGSNEEEPFLKMMECRICQEEDSLENLETPCACSGSLKYAHRKCVQRWCNEKGDIICEICHQPYQPGYTAPPPPPHPEDTAIDIGGGWTISGTPLDLRDPRLLAMAEAERHFLEAEYDEYTATNATGAAFCRSVALILMALLLLRHALTITDADTDGDDDTSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTVAPAHVVAPPQEPA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1054 534 Pfam RING-variant domain 314 359 IPR011016 GO:0008270
Vvi1g1054 534 SMART ringv_2 313 360 IPR011016 GO:0008270
Vvi1g1054 534 ProSiteProfiles Zinc finger RING-CH-type profile. 306 366 IPR011016 GO:0008270
Vvi1g1054 534 MobiDBLite consensus disorder prediction 273 305 - -
Vvi1g1054 534 FunFam RING/FYVE/PHD zinc finger protein 302 370 - -
Vvi1g1054 534 SUPERFAMILY RING/U-box 312 364 - -
Vvi1g1054 534 Coils Coil 402 422 - -
Vvi1g1054 534 CDD RING_CH-C4HC3_MARCH 314 360 - -
Vvi1g1054 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 368 IPR013083 -
Vvi1g1054 534 MobiDBLite consensus disorder prediction 291 305 - -
Vvi1g1054 534 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 256 495 IPR033275 -
Vvi1g1054 534 Pfam Protein of unknown function (DUF3675) 365 485 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1054 Vvi-Chr1 12066597 12080400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1054 313 400 C3H Transcription Factor Family AT2G37950 29.670 7.97e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1054 - - vvi:100256824 472.241