Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1052 ATGCCGTCGCCGACTTCCACTCCTGCCGACCCCACCTCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAATTTCCACCGCCGCGACCCTGATGAACCCACCACTCATGTCATCGAAATCCACCGCCACCCACTGGGGCCGCCCCGCCGGAGCTCACCCTCACCGTCCCCATCTCCACCGCCACCGCCCCATCCCTCGTCATACTACTCATCCGCACCCCAGATGCTCCTAGCTCTCAGCAGCGGCGGTGCGGGGCGGTCCGACGAGCACCAGATTCATCCCATAACGGTGACGAGGCAGGACATCCCAAATGGAAGAAAGCGGTTTCGCACCAAGTTCAGTCAAGAGCAGAAGGAGAAGATGTTCTCGTTCTCTGAAAAATTGGGGTGGAAGATGCAGAAGAGCGATGAGGGTTTGGTTGAAGAGTTCTGCAATGAAGTTGGTGTTGGCAAAGGGGTGCTCAAGGTTTGGATGCACAACAACAAGCACACTTTTGGTAAGAGAGATATTAGCAGCAATAACAACAACAATAACGACGGTCATGACACTATAATTAGCTTTGCCACCACCAATGGTCTCAACAATATCAATGGCGACAGCAACCACAATGAGAAGACTTGTAGTTTTGATGACCATCATCAACAAAATCATCTTCATCATCTTTCCACTAATGGGTCTTCTTCCTCATCTTGA 693 0.5296 MPSPTSTPADPTSLKCAACGCHRNFHRRDPDEPTTHVIEIHRHPLGPPRRSSPSPSPSPPPPPHPSSYYSSAPQMLLALSSGGAGRSDEHQIHPITVTRQDIPNGRKRFRTKFSQEQKEKMFSFSEKLGWKMQKSDEGLVEEFCNEVGVGKGVLKVWMHNNKHTFGKRDISSNNNNNNDGHDTIISFATTNGLNNINGDSNHNEKTCSFDDHHQQNHLHHLSTNGSSSSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1052 230 MobiDBLite consensus disorder prediction 23 70 - -
Vvi1g1052 230 Gene3D - 96 166 - -
Vvi1g1052 230 SUPERFAMILY Homeodomain-like 103 167 IPR009057 -
Vvi1g1052 230 MobiDBLite consensus disorder prediction 23 46 - -
Vvi1g1052 230 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 29 IPR006456 -
Vvi1g1052 230 Pfam ZF-HD protein dimerisation region 5 30 IPR006456 -
Vvi1g1052 230 NCBIfam homeobox domain, ZF-HD class 106 162 IPR006455 -
Vvi1g1052 230 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 165 - -
Vvi1g1052 230 MobiDBLite consensus disorder prediction 48 68 - -
Vvi1g1052 230 FunFam Zinc-finger homeodomain protein 2 96 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1052 Vvi-Chr1 12042374 12043066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1052 1 165 ZF-HD Transcription Factor Family AT1G69600 53.757 9.74e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi1g1052 ZF-HD_dimer 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1052 - - vvi:100251688 412.535