Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1051 ATGAAGAAGTGTGAAGTGGTGATAAAAGGAGCAAAGGAACAAGGCAAAAGTTCTTCTAGTTCATCTGTCACCTTGAAGAGTATCAGCTATGGACAGTGCCAAAAGAACCATGCTGCTAAATCCGGAGGGTATGCAGTAGACGGGTGCAGAGAGTTCATGGCAAGTGGAGAGGAAGGAACGCGCGAAGCCCTCAAATGCGCTGCCTGCGGCTGCCACCGCAACTTCCATAGAAGGGAAGTGGATGCTGATCAATCCTAG 258 0.4961 MKKCEVVIKGAKEQGKSSSSSSVTLKSISYGQCQKNHAAKSGGYAVDGCREFMASGEEGTREALKCAACGCHRNFHRREVDADQS* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1051 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 81 - -
Vvi1g1051 85 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Vvi1g1051 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Vvi1g1051 85 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 30 80 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1051 Vvi-Chr1 12038070 12038327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1051 1 83 Zinc finger-homeobox gene family AT3G28917 60.920 5.51e-30 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi1g1051 ZF-HD_dimer 6.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1051 - - pop:7482471 123.635