Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1043 ATGGAGAGAAATGATGCTGATAAACTGGAGGAAGTCATGCTTCCGGGGTTTCGGTTTCATCCCACGGACGAGGAGCTGGTTGGGTTTTACCTGAAGAGGAAGATTCAGCAGAAGCCTCTCTCTATTGAGCTCATCAAGCAACTAGATATCTATAAATATGATCCCTGGGATCTTCCAAAGTTGGCAACCACGGGAGAGAAAGAATGGTATTTTTACTGCCCTAGGGACCGCAAGTATAGAAACAGTGCTCGACCTAATCGAGTAACTGGAGCTGGATTTTGGAAAGCCACAGGAACGGACCGACCTATCTACTCCTCTGAAGGTACCAAGTGCATTGGCTTGAAGAAGTCTCTTGTTTTCTACAAAGGCAGAGCTGCTAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTCGGTTGCCTTCTCTCACCAACTCCGCGCCACCAAAAAGATTAATGGACAAAAGCGTTCCTGCCAATGATTCATGGGCAATTTGCAGGATCTTTAAGAAAACCAACTCCATGGCACAAAGAGCTCTCTCTCACTCATGGGTCTCTCCATTGCCTGAAACCACAACATCTGATATACTCGGCCAGTTTGCACGCAATGCTGATCATCAGTTTAGTTCAGAGAATATGTCACTGGCAGCAAAACCTAGCTCGGGCTTCCATTTTTGTTTTACCGAAGATTTACAACAAACCTCCACTACTACTTTCTCTCCTATACATGTTTCCTCCTACAAGCCCATTAATCCAATTGCTGGTAAACCATCTCAACTTTCCACTGCCATAGGAGACCTTCATACAAGCTTCATGCTTTCACAGCTGGGAACGTCTGGACCTGTAACACCCACAGTTGATGTTTCTTCCATGCTGTTAAATATGCCATCTTCCATGCTTGGAGATCTTGGTAAGACCTCTGAGAGCATAGATTTTAGCGGGTCAGAACAGCTATGCAATGGCTTCCCAGTCACTTTACCGCAGGATATACAAGGCAATGTCTGTAGTGGCGAAGAGGCTGCCTTGCTGAAGAACCTGAATGTGATACATGGTGATGATCAATGGGAGTCTGTTCGAGCAATGGGATTTCCCTTCGGTTTGCCTTTGAATATGGCTGAAGGATGGAAACCAAACATGCTGTGGGATTCTTCTCCATGCCCTAGTGAGATGTCCACAAGTTATTCTACGAACAAGTGCTATACTTAA 1206 0.4519 MERNDADKLEEVMLPGFRFHPTDEELVGFYLKRKIQQKPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNSAPPKRLMDKSVPANDSWAICRIFKKTNSMAQRALSHSWVSPLPETTTSDILGQFARNADHQFSSENMSLAAKPSSGFHFCFTEDLQQTSTTTFSPIHVSSYKPINPIAGKPSQLSTAIGDLHTSFMLSQLGTSGPVTPTVDVSSMLLNMPSSMLGDLGKTSESIDFSGSEQLCNGFPVTLPQDIQGNVCSGEEAALLKNLNVIHGDDQWESVRAMGFPFGLPLNMAEGWKPNMLWDSSPCPSEMSTSYSTNKCYT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1043 401 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Vvi1g1043 401 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Vvi1g1043 401 Gene3D NAC domain 22 176 IPR036093 GO:0003677|GO:0006355
Vvi1g1043 401 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 221 - -
Vvi1g1043 401 ProSiteProfiles NAC domain profile. 13 171 IPR003441 GO:0003677|GO:0006355
Vvi1g1043 401 FunFam NAC domain-containing protein 35 22 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1043 Vvi-Chr1 11873303 11874933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1043 4 363 NAC Transcription Factor Family AT1G26870 53.247 5.41e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi1g1043 NAM 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1043 - - vvi:100256910 828.55