Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1029 ATGATCATGGAGGGAGAAAATGGAATCCGCCGCCCTAATTTTCCATTACAATTACTAGAGAAAAACAAGGATGAAGTAGCATCCACTGCATCCAATTCAGGTCCACAGATCTCGGAGCCTCCCAAGAAGCCTCCACCTAAAAGGACCTCCACCAAGGATAGGCATACTAAGGTCGATGGGAGGGGGCGCCGCATCCGCATGCCTGCCACCTGCGCCGCTAGGGTGTTTCAGTTGACTAGGGAATTAGGCCACAAGTCCGACGGCGAGACCATCGAGTGGTTGTTACAACAGGCGGAGCCCGCAGTCATCGCTGCCACCGGAACCGGTACAATTCCCGCCAATTTTACTTCACTGAATATCTCTCTTCGGAGCTCCGGTTCTAGCATGTCTGCACCTTCCCACCTGAGGACTAGCTACTATAATCCCAACTTTGCCAGGAACCGGACCGAATGGGAAAGGAATATCGATGAATCTTTGCGCAGAATTGTGCTACCGGGCGTTGGATTATCATCGGAGAATTCGTCTTCTACCCTTCTGAATTTTTCTTCCAGTAGTGTGAATGCCATGTTACAGGCAAAGCCGGAGCTACGTGAGACTTGCTTGGATGTGTCAGATGCCGAGGCAACCATAGGGAGAAAGAGGCAGCCAGAGCAGGATCCGTCCCATAGTCAGATGGGGAACTACTTGTTGCAGTCGGGTTCGGGGTCTATCCCGTCCACTCATAGTCAGATTCCGACCACGTTTTGGATGGTGACTAATCCAAGTAACCAAGTGATGAGTGGGGATCCCGTGTGGACATTTCCTTCTGTTAATAACAGCTCCATGTATAGAGGGACCATGTCAAGTGGGCTACATTTTATGAATTTTCCTACTCCAATGGCTCTCTTGCCTGGGCAGCAGTTGGGTTCAGGAATTGGTGGAAGTGGGGGCGTGGCCGATGGCCACTTGGGCATGTTAGCCGCTCTCAATGCGTTTAGGCCGCTTCCTGGCAACGGGGCACCGGACTCGCAGCAGACTGCTTCACATCCCCACAACGGAGGAGACCATAGACATGATACAACTAGCTAG 1068 0.5187 MIMEGENGIRRPNFPLQLLEKNKDEVASTASNSGPQISEPPKKPPPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSAPSHLRTSYYNPNFARNRTEWERNIDESLRRIVLPGVGLSSENSSSTLLNFSSSSVNAMLQAKPELRETCLDVSDAEATIGRKRQPEQDPSHSQMGNYLLQSGSGSIPSTHSQIPTTFWMVTNPSNQVMSGDPVWTFPSVNNSSMYRGTMSSGLHFMNFPTPMALLPGQQLGSGIGGSGGVADGHLGMLAALNAFRPLPGNGAPDSQQTASHPHNGGDHRHDTTS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1029 355 MobiDBLite consensus disorder prediction 210 241 - -
Vvi1g1029 355 MobiDBLite consensus disorder prediction 328 355 - -
Vvi1g1029 355 ProSiteProfiles TCP domain profile. 51 105 IPR017887 -
Vvi1g1029 355 MobiDBLite consensus disorder prediction 220 241 - -
Vvi1g1029 355 MobiDBLite consensus disorder prediction 1 63 - -
Vvi1g1029 355 Pfam TCP family transcription factor 49 225 IPR017887 -
Vvi1g1029 355 MobiDBLite consensus disorder prediction 45 63 - -
Vvi1g1029 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 342 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1029 Vvi-Chr1 11610314 11611381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1029 10 352 TCP Transcription Factor Family AT1G69690 45.580 5.51e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi1g1029 TCP 9.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1029 - - vvi:100260247 657.907