Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1025 ATGGCTGAAAGAGTGCCAGAAGAACATATTTCCATTAGTAAATCAGGTTCTAGTGCCAGACAAACTCCTAATATTGTAGATATGTTCTCTAATGAGAACCATTCAACAAGCCTAACCTCTCCTGAGAGCGAGTCCAATGGCAGTTCAGTAAATCCTATCTTGTCCAGTGGAACCAAGGCACAAACTGAAAAGTCAGACTGGGTAGTGCAAGATGAACCAGGCGTGTACCTAACTCTTTCGTCCTTGGCAGGGGGTGGTAATGAACTCAGACGGGTTCGTTTCAGTCGGAAACGCTTCACTGAGGAACAGGCAGAGGTTTGGTGGGCTGAAAATGGGTCCAAAGTATGTGAGCGGCACGACATAAGAAGTGTGGAGTAA 378 0.4603 MAERVPEEHISISKSGSSARQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKAQTEKSDWVVQDEPGVYLTLSSLAGGGNELRRVRFSRKRFTEEQAEVWWAENGSKVCERHDIRSVE* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1025 125 MobiDBLite consensus disorder prediction 1 65 - -
Vvi1g1025 125 ProSiteProfiles BRX domain profile. 65 120 IPR013591 -
Vvi1g1025 125 PANTHER PROTEIN BREVIS RADIX-LIKE 1 20 117 IPR044532 -
Vvi1g1025 125 MobiDBLite consensus disorder prediction 11 64 - -
Vvi1g1025 125 Pfam Transcription factor regulating root and shoot growth via Pin3 65 119 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1025 Vvi-Chr1 11543271 11545370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1025 66 122 Major Intrinsic Protein MIP AT1G31880 47.368 1.62e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1025 - - vvi:100250008 251.906