Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1022 ATGGTCCACGTCTCCTTCTACCGGAACTATGGAAAGACATTTAAGAAGCCTCGACGGCCATATGAGAAGGAACGTTTGGATGCTGAGCTGAAGCTTGTTGGAGAATATGGGCTCCGATGCAAGAGGGAACTGTGGAGGGTCCAGTATGTTCTTAGCCGCATTCGCAACAATGCAAGAATGCTTCTCACCCTTGATGAGAAGAATCCACGGCGGATTTTCGAGGGTGAAGCCCTTTTGAGGAGGATGAACAAGTATGGGCTGTTGGATGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTTACTGTGGAGAACTTTCTTGAACGTCGCCTCCAAACTCTAGTATTCAAGTCAGGCATGGCAAAGTCAATCCACCATGCCAGAGTGCTCATCAGGCAGAGGCATATCAGGGTGGGCAGGCAGGTGGTCAATATTCCCTCATTCATGGTGAGGGTGGAGTCACAGAAGCACATTGATTTCGCTAACACAAGTCCCCTTGGTGGTGGTCGCCCTGGGAGAGTGAAGAGAAAGAACTTGAAGGCAGCTGCCAAGAAGGCTGCTGGTGGAGATGGAGATGAAGAAGATGAAGATTGA 594 0.4966 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNKYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVESQKHIDFANTSPLGGGRPGRVKRKNLKAAAKKAAGGDGDEEDED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1022 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 184 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vvi1g1022 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Vvi1g1022 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vvi1g1022 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Vvi1g1022 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Vvi1g1022 197 SMART s4_6 109 180 IPR002942 GO:0003723
Vvi1g1022 197 MobiDBLite consensus disorder prediction 162 197 - -
Vvi1g1022 197 CDD S4 109 153 - -
Vvi1g1022 197 FunFam 40S ribosomal protein S9 108 189 - -
Vvi1g1022 197 Pfam S4 domain 109 153 IPR002942 GO:0003723
Vvi1g1022 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Vvi1g1022 197 SUPERFAMILY Alpha-L RNA-binding motif 12 166 - -
Vvi1g1022 197 Gene3D - 108 185 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1022 Vvi-Chr1 11489497 11496521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1022 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.374 3.69e-125 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1022 K02997 - vvi:100267189 358.992