Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1018 ATGTGGAGTAAGGGAGCGTGGATCGTGGGTTTGCTGTGTTTGGCTTTGGCATTTGTTGTGGGTGCTTCTTCGCAAGAACCCCAACTGGGTTCCGCTCGCGTTGTTTTTCAGACCAACTATGGAGACATTGAATTTGGGTTTTTTCCTGGTGTTGCACCCAAAACTGTTGACCACATTTTCAAACTCGTTCGTTTGGGATGCTTTAATACCAACCACTTTTTCCGGGTTGATAGGGGATTTGTTGCCCAAGTGGCAGATGTTGTTGGTGGAAGATCAGCTCCGATGAATGAAGAGCAGCGGGAAGAAGCTGTGAAAACGGTTGTTGGTGAATTCAGTGATGTCAAACATGTGAGAGGTATTCTATCTATGGGGAGGTATGCTGATCCAGACAGTGCCTCATCTTCGTTTTCAATGCTTCTTGGAGATGCTCCTCATCTTGATGGCCAGTATGCAATATTTGGCAGGGTTACTAAAGGTGATGAGACATTGAAAAAGCTTGAGCAACTCCCTACTCGACGTGAGGGGATCTTTGTAATGCCGACTGAGCGCATCACAATTCTGTCTTCGTACTTCTATGATACCAAGATGGAAACTTGTGAACAGGAGAAGTCAACATTGAAACGAAGGCTTGCCGCATCTGTGGTTGAAATTGAAAGACAGAGAATGAAATGCTTCCCGTGA 681 0.4552 MWSKGAWIVGLLCLALAFVVGASSQEPQLGSARVVFQTNYGDIEFGFFPGVAPKTVDHIFKLVRLGCFNTNHFFRVDRGFVAQVADVVGGRSAPMNEEQREEAVKTVVGEFSDVKHVRGILSMGRYADPDSASSSFSMLLGDAPHLDGQYAIFGRVTKGDETLKKLEQLPTRREGIFVMPTERITILSSYFYDTKMETCEQEKSTLKRRLAASVVEIERQRMKCFP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1018 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 Gene3D - 20 200 IPR029000 -
Vvi1g1018 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 7 226 IPR044233 -
Vvi1g1018 226 CDD cyclophilin 35 188 - -
Vvi1g1018 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Vvi1g1018 226 SUPERFAMILY Cyclophilin-like 33 197 IPR029000 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1018 34 192 U-box Gene Family AT5G67530 27.108 1.86e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1018 - - vvi:100244863 454.521