Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1016 ATGTCAAGCAGGAGATCGCGTTCAAGACAGCCAGGAGTTTCGAGGATAAGTGACGATCAGATTGCTGATCTCGTGTCCAAGTTACAGCAGCTTATTCCTGAGATTCGCAATAGGCGCTCCGACAAGGTATCGGCTTCTAAAGTCTTGCAGGAGACTTGCAACTATATTAGAAATTTGCATAGAGAGGTGGATGACCTAAGCGATCGATTGTCTGCGCTTTTGGCTTCCACCGACACGGATAGCGATCAGGCTGCCATAATTAGGAGCTTACTCATGTAA 279 0.4695 MSSRRSRSRQPGVSRISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSALLASTDTDSDQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1016 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Vvi1g1016 92 CDD bHLH_AtPRE_like 10 76 - -
Vvi1g1016 92 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Vvi1g1016 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vvi1g1016 92 FunFam Transcription factor ILI6 7 88 - -
Vvi1g1016 92 Gene3D - 2 88 IPR036638 GO:0046983
Vvi1g1016 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 76 IPR036638 GO:0046983
Vvi1g1016 92 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1016 Vvi-Chr1 11409616 11410189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1016 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.968 1.44e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g1016 HLH 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1016 - - vvi:100256731 169.859