Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1010 ATGACTTGCAATGGGATGGCTTTCTTCCCAGCCAATTTCATGCTACAGACTCCCCGCGAAGATGATCATCAGCCTCCTAACTCTCTCAATCCAATTCTACCCTCATGCGCACCTCAAGATTTCCATGGTGTTGCATCGCTTCTAGGAAAGAGATCCATGTCGTTTTCAGGTATTGACGTGTGTGAAGAAACAAATGGGGAGGATGATTTGTCTGATGATGGCTCACAGGCCGGAGAAAAGAAGAGGAGGCTGAACATGGAGCAGGTGAAAACACTTGAGAAGAATTTTGAGTTGGGTAACAAGCTTGAGCCCGAGAGGAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAACCAAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGGTGGAAGACCAAGCAATTGGAGAAAGACTATGATCTCCTTAAGAGACAGTTCGAAGCAGTTAAAGCAGAAAATGATGCACTCCAAGCTCAGAACCAGAAACTTCATGCTGAGATGTTGGCGCTAAAAAGCAGAGAGCCAACTGAGTCCATCAACCTCAATATTAAAGAAACTGAGGGTTCTTGCAGTAACAGAAGTGAGAACAGTTCTGATATCAAGCTAGACATCTCAAGGACACCAGCAATTGACAGCCCTCTATCCACCCATCCAACCAGCAGACCCCTATTTCCATCATCTATTAGGCCTGCGGGTGTGGTCCAACTCTTCCAAAATTCATCATCCAGACCAGACCTTCAATGCCAGAAGATGGATCAACCAGTCAAAGAAGAAAGCTTTTGCAACATGTTCTGTGGCATGGACGATCAATCTGGATTTTGGCCATGGCTGGAACAACAGCATTTCAATTGA 858 0.4592 MTCNGMAFFPANFMLQTPREDDHQPPNSLNPILPSCAPQDFHGVASLLGKRSMSFSGIDVCEETNGEDDLSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKAENDALQAQNQKLHAEMLALKSREPTESINLNIKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHPTSRPLFPSSIRPAGVVQLFQNSSSRPDLQCQKMDQPVKEESFCNMFCGMDDQSGFWPWLEQQHFN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1010 285 CDD homeodomain 80 136 IPR001356 GO:0003677
Vvi1g1010 285 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Vvi1g1010 285 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Vvi1g1010 285 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Vvi1g1010 285 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Vvi1g1010 285 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
Vvi1g1010 285 SMART HOX_1 78 139 IPR001356 GO:0003677
Vvi1g1010 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 212 IPR045224 GO:0003700
Vvi1g1010 285 FunFam Homeobox-leucine zipper protein ATHB-13 72 139 - -
Vvi1g1010 285 Gene3D - 72 141 - -
Vvi1g1010 285 Coils Coil 127 175 - -
Vvi1g1010 285 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Vvi1g1010 285 SUPERFAMILY Homeodomain-like 70 137 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1010 Vvi-Chr1 11305229 11306779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1010 1 285 Homeobox Transcription Factor Family AT1G69780 65.789 1.69e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi1g1010 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1010 K09338 - vvi:100241332 585.489