Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1006 ATGCAAATGAAGAAGAAGGGTAATACTGACGCTCCTCCTAAGCAGAAGGAGCGACACATAGTTACGTGGAGTCAACAGGAGGATGACATTCTCCGCGAGCAAATTAGCCTCCATGGAACTGAAAATTGGGCGATCATTGCGTCCAAGTTCAAGGATAAAACAACTAGACAGTGTAGAAGAAGATGGTACACTTATTTGAATTCGGATTTCAAGAAAGGAGGATGGTCTCCGGAGGAAGACCTGATCTTATGCGAGGCTCAGAAGATCTTTGGTAACCGGTGGACTGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGATTCTCGACTTTGTGCAAGAAGAGGGCAAAACATGAAGCCTTGGCAAAAGAGAACAGCACTTCATATATCAATAGCAACAACAAAAGGGCTTTATTTAACAATGGCTTCAATACAGATGGAACGACAGAAGCTGCAGTTTCTCTTAAGAAGATGAGGAGGACCCATCTCCCTGATCTTACAGAAAACTGCAATGGTGGAGAAACATTGCTTAGTGAATGTGGAACGACAACAAATCAACAGCCAAGGCCTCCATTTGCGGTATTGGTTCAAAATTTCCGGAGTGTTAACAGCTTGCCAGTTCAGCATCATGTTGGCAGCACCAAAGAAGTCTCCAATGATGCATCACAGAATAACAAGATTCAAGGAACATTTCTCAAGAAGGATGATCCAAAGATAACTGCCTTGATGCAACAAGCAGAATTGCTCAGCTCGCTTGCACTTAAAGTTAATGCAGAGAACACAGACCAGAGCCTTGAAAATGCATGGAAGGTATTCCAAGATTTTCTCAATCAAACCAAAGAAAGCGACATGCTCAGATTCAATATTTCTGAAATGGATTTTCAACTTGAAGATTTCAAAGATTGGGTAGAGGACTTAAGGAGTAGTACTGAGGGAAGTCGGCCATCTTGGAGGCAACCTGATTTATATGAGGAGTCTCCAGGCAGCTCTGAATACAGTACAGGATCAACTCTTGTGTCCCAAACAGCAGGCGATAAAATAGAACAAACTCAACCTGAGATATGTGCACTACATCAGGAAATTGGAGTTAGGTTACAAACAATTCCTATGGATCAAAATGGCTTTGAAGAATGTGTTAAGGGGGTTCTTTCGGGTACAACCACAAATCAAGCAGAGATTTTTCCTTCTTGTGATGAACCAAAAACCAATGATGTAGTTGCTTCTAACTTGTCAAGCACAGAGTTCAGTTCCCCTCTTCAAGTGACCCCACTGTTCAGATCCTTGGCAGCAGGAATTCCTAGCCCAAAATTTTCAGAGAGTGAGAGGAACTTCCTACTGAGAGCACTTGGAATGGAGTCCCCTACCCCTAATCCAAGCAGTAACCCTTCACAACCACCACCTTGCAAAAGGGCCCTCCTCCAAAGTCTATAA 1446 0.4302 MQMKKKGNTDAPPKQKERHIVTWSQQEDDILREQISLHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLILCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKHEALAKENSTSYINSNNKRALFNNGFNTDGTTEAAVSLKKMRRTHLPDLTENCNGGETLLSECGTTTNQQPRPPFAVLVQNFRSVNSLPVQHHVGSTKEVSNDASQNNKIQGTFLKKDDPKITALMQQAELLSSLALKVNAENTDQSLENAWKVFQDFLNQTKESDMLRFNISEMDFQLEDFKDWVEDLRSSTEGSRPSWRQPDLYEESPGSSEYSTGSTLVSQTAGDKIEQTQPEICALHQEIGVRLQTIPMDQNGFEECVKGVLSGTTTNQAEIFPSCDEPKTNDVVASNLSSTEFSSPLQVTPLFRSLAAGIPSPKFSESERNFLLRALGMESPTPNPSSNPSQPPPCKRALLQSL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1006 481 SMART sant 19 68 IPR001005 -
Vvi1g1006 481 SMART sant 71 119 IPR001005 -
Vvi1g1006 481 MobiDBLite consensus disorder prediction 331 350 - -
Vvi1g1006 481 MobiDBLite consensus disorder prediction 455 481 - -
Vvi1g1006 481 Gene3D - 14 71 - -
Vvi1g1006 481 CDD SANT 22 66 IPR001005 -
Vvi1g1006 481 MobiDBLite consensus disorder prediction 313 350 - -
Vvi1g1006 481 SUPERFAMILY Homeodomain-like 45 125 IPR009057 -
Vvi1g1006 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Vvi1g1006 481 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vvi1g1006 481 PANTHER MYB PROTEIN-RELATED 22 156 - -
Vvi1g1006 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vvi1g1006 481 FunFam Transcription factor MYB124 15 71 - -
Vvi1g1006 481 CDD SANT 75 116 IPR001005 -
Vvi1g1006 481 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Vvi1g1006 481 Gene3D - 74 143 - -
Vvi1g1006 481 Pfam Myb-like DNA-binding domain 23 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1006 Vvi-Chr1 11258227 11265180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1006 61 481 MYB Transcription Factor Family AT1G14350 54.265 1.83e-149 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g1006 Myb_DNA-bind_6 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1006 K09422 - vvi:100246639 959.903