Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1003 ATGGGTAACTGCCTAGATTCTTCGGCCAGAGTGGATAGCACCCAGAGCTCCCATACCACTTCTGGAGCCTCAAAAGTTGTCAGCAAAACCAGCAATTCTTCTGCTCCTTCGACCCTGACAGTCCCATCTTACAGTGAAAGGAGTACTGCTGAAAGTTTTCCCACTCCAAGATCAGAAGGTGAAATATTGCCATCTCCAAGTTTGAAAGCCTTCTCATTTAATGACCTAAAGAATGCTACCAGAAACTTCCGTCCGGACAGTCTACTCGGTGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATTGATGAACAAACACTTGCTGCTGTAAAGCCTGGATCCGGAATGGTTATTGCTGTTAAGAAGCTTAAACCTGAAGGTTTTCAAGGCCACAAGGAGTGGTTGACAGAAGTTAACTATCTTGGCCAACTTCATCATCCAAACTTGGTTAAACTTATTGGGTACTGCTTGGAGGGTGAGAACCGGCTTTTGGTCTATGAGTTCATGCCTAAAGGGAGCTTGGAGAATCATCTCTTTAGAAGAGGACCACAGCCACTTTCTTGGGCAGTAAGGATCAGAGTGGCTATAGGTGCTGCAAGAGGTCTCTCTTTTCTGCACGATGCTGAATCTCAAGTCATATATCGTGACTTTAAGGCTTCTAACATCCTACTAGATGCGGAATTCAATGCAAAGCTTTCAGATTTTGGTTTGGCTAAAGCGGGGCCAACTGGTGACAGGACTCATGTGTCCACTCAAGTTATGGGTACACATGGCTATGCAGCACCTGAATATGTTGCTACAGGTCGGCTGACAGCAAAGAGTGATGTTTACAGCTTTGGGGTTGTGTTGTTAGAACTATTGTCTGGACGTCGTGCTGTCGATAAAACAAAAATTGGTGTAGAGCAGAACCTGGTAGACTGGGCCAAACCATATTTGGGTGACAAAAGGAGATTGTTCCGAATTATGGACACCAAGTTGGAGGGCCAGTACCCCCAGAAAGGAGCCTTCATGGCTGCTACCCTTGCCTTACAGTGCCTTAACACTGAAGCTAAAGTCAGGCCACGAATGTCGGAGGTTTTAGCAACACTGGAACAGATCCAATCCCCAAAAAATGCAGCAAAACACATCCAGTCAGAACAGCATACAGTTTCCATTCCTGTCCAGAAGTCCCCATTGAGACAACAGCATTCTCCACTGAATCTGACGCCACGGGCATCCCCATTGCCATCCTACAGACAATCCCCTCGTGTACGTTGA 1257 0.4614 MGNCLDSSARVDSTQSSHTTSGASKVVSKTSNSSAPSTLTVPSYSERSTAESFPTPRSEGEILPSPSLKAFSFNDLKNATRNFRPDSLLGEGGFGYVFKGWIDEQTLAAVKPGSGMVIAVKKLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWAVRIRVAIGAARGLSFLHDAESQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTKIGVEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNTEAKVRPRMSEVLATLEQIQSPKNAAKHIQSEQHTVSIPVQKSPLRQQHSPLNLTPRASPLPSYRQSPRVR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1003 418 PANTHER OS01G0588500 PROTEIN-RELATED 30 367 - -
Vvi1g1003 418 MobiDBLite consensus disorder prediction 371 409 - -
Vvi1g1003 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vvi1g1003 418 Gene3D Transferase(Phosphotransferase) domain 1 169 390 - -
Vvi1g1003 418 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672|GO:0006468
Vvi1g1003 418 FunFam Probable serine/threonine-protein kinase PBL8 169 382 - -
Vvi1g1003 418 MobiDBLite consensus disorder prediction 1 64 - -
Vvi1g1003 418 SUPERFAMILY Protein kinase-like (PK-like) 57 363 IPR011009 -
Vvi1g1003 418 ProSiteProfiles Protein kinase domain profile. 83 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1003 418 CDD STKc_IRAK 89 366 - -
Vvi1g1003 418 Gene3D Phosphorylase Kinase; domain 1 60 168 - -
Vvi1g1003 418 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Vvi1g1003 418 FunFam Serine/threonine-protein kinase BIK1 50 168 - -
Vvi1g1003 418 MobiDBLite consensus disorder prediction 371 418 - -
Vvi1g1003 418 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1003 Vvi-Chr1 11234702 11239025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1003 59 363 Glycoside Hydrolase AT3G07070 54.545 7.58e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi1g1003 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1003 - - vvi:100253317 817.764