Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1002 ATGGGAAATTGTCTTAAGAAGAAGAAACTTGAAGATCCCAACAGAGATGATGCTCGACCACCAACTGGGGTCCGAATTTCACTGCAGCAGAAAAATTCTGTACCAATCCAAGGGAGGAATTCAGAGGCTCCTATGACAGTTCAAGGGAGGAATTACACTTCAATTCAAAAAAGGAATCCAACGAGAAAAAGGCGTCCTCGAGGCAAGAAACATGGTCCAAATACTCAAAGAGATCGGTCATTAGCAAGGGCTATCAAGAAAGAAGAAGTTCTTCATGCTTACAGGCCTACGCAATTCAGCTACAATGTGTTGCACGCTGCCACTAATAAATTCAGTAACAAAAATTTGATTGGAAGAGGTGGTTTTGGTGATGTTTTTAAAGGATGGATCCATTCATGCGCAAAGACTCCAGCAAAACCAAATGATGGGCAAGCAATCGCTGTCAAGAGGCTCAGAAACAAGCAACCACAAGGCCATGAGGCATGGCAGAATGAACTGAACTTTTTGACCAAAATAAGTCATCAAAATCTAGTCAAGCTGATCGGATATTGTTGTGAGTGTGAACATAAGATTTTAGTATATGAGTATATGCCCAAGGGAAGCTTGGATGCTCATCTCTCCAAAGAGAGGGATACAGAGCTAACCTGGGGGAGAAGAATCAAAATAGCAGTTGGGGTAGCCAGGGGTTTAGATCATCTTCACACTGTTCCGAGGCCAATCATTCATCGGGATCTAAAGACCTCCAATGTCCTGCTTGATGCTGACTTCAACCCCAAGCTTTCAGACTTCGGACTTGCTAAATATGGTCCTCATGATCATGAAACCCACGTCTCCACAAGGGTACTCGGCACCAAAGGATATGTCGCTCCTGAATACATTGGAACAGGGCATCTCACATTGAAATCCGACGTGTACAGCTTTGGAGTAGTGCTACTAGAGATCTTATCCGGCTCTTCTGCAGTGGATAGATTCTCAAATGGAATGTTAGAGAATCTGGCTGATCATGCTAAACCATATCTGAGCAATAAGCTGCGACTGCCTCATGTTATTGACAAAAGACTTGGGAGCAATTTCAGCATGGAAGAAGCTCAAGAGTTGGCTGAGATAATCCTTCAATGTCTAAATTCAGATGCCAATAGTCGGCCGACCATGACCGAGGTCTTGTCTTCCCTGGAGCAACTAGAGCAACACAGGGACAGCAGCAAACATAACTTACGCGGACTTGCTGCACCCCAGAAGGTCCTCCCACTTAACTTCCACAGAGACATCAAGGAAAATCCTGTGAGCTAA 1290 0.4434 MGNCLKKKKLEDPNRDDARPPTGVRISLQQKNSVPIQGRNSEAPMTVQGRNYTSIQKRNPTRKRRPRGKKHGPNTQRDRSLARAIKKEEVLHAYRPTQFSYNVLHAATNKFSNKNLIGRGGFGDVFKGWIHSCAKTPAKPNDGQAIAVKRLRNKQPQGHEAWQNELNFLTKISHQNLVKLIGYCCECEHKILVYEYMPKGSLDAHLSKERDTELTWGRRIKIAVGVARGLDHLHTVPRPIIHRDLKTSNVLLDADFNPKLSDFGLAKYGPHDHETHVSTRVLGTKGYVAPEYIGTGHLTLKSDVYSFGVVLLEILSGSSAVDRFSNGMLENLADHAKPYLSNKLRLPHVIDKRLGSNFSMEEAQELAEIILQCLNSDANSRPTMTEVLSSLEQLEQHRDSSKHNLRGLAAPQKVLPLNFHRDIKENPVS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1002 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vvi1g1002 429 ProSiteProfiles Protein kinase domain profile. 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1002 429 MobiDBLite consensus disorder prediction 25 56 - -
Vvi1g1002 429 Gene3D Transferase(Phosphotransferase) domain 1 197 411 - -
Vvi1g1002 429 FunFam Serine/threonine-protein kinase BIK1 78 196 - -
Vvi1g1002 429 MobiDBLite consensus disorder prediction 1 81 - -
Vvi1g1002 429 Pfam Protein tyrosine and serine/threonine kinase 114 391 IPR001245 GO:0004672|GO:0006468
Vvi1g1002 429 MobiDBLite consensus disorder prediction 1 19 - -
Vvi1g1002 429 SMART serkin_6 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1002 429 SUPERFAMILY Protein kinase-like (PK-like) 93 395 IPR011009 -
Vvi1g1002 429 PANTHER OS01G0588500 PROTEIN-RELATED 76 395 - -
Vvi1g1002 429 Gene3D Phosphorylase Kinase; domain 1 81 196 - -
Vvi1g1002 429 ProSitePatterns Protein kinases ATP-binding region signature. 117 149 IPR017441 GO:0005524
Vvi1g1002 429 MobiDBLite consensus disorder prediction 57 72 - -
Vvi1g1002 429 CDD STKc_IRAK 117 394 - -
Vvi1g1002 429 FunFam Leucine-rich repeat receptor-like protein kinase 197 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1002 Vvi-Chr1 11232314 11234303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1002 99 401 Receptor kinase-like Gene Family AT3G58690 43.366 1.92e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi1g1002 PK_Tyr_Ser-Thr 7.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1002 - - vri:117920244 775.393