Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0994 ATGTTGATGTCGACCTTGCTGGGAAAGTCGAACGAAATATCCCTGAAGAAAATCCAGAAAGAGAATGCTCTCAGGTTTCATGTCCTTCAAGAGTTTGATGAGGGGAAAAGGAGTTGTCAGAGACGTTTAGCTGGCCATAATAAAAGAAGGAGGAAGACACACCCAGATGTTGCCGATAATGGAAATTCATTGAATGATGATCAGGCTAGTGGATATCTCTTGATAAGTTTACTGAGGATACTTTCCAACGTGCATCCCAATAATAAGTCAGATCAGACTAAGGATCAGGATCTGCTGTCCCATATTTTAAGAAGCCTCGCCAGATGTAGCTTTCACCCCAACATAGGGTGA 351 0.4245 MLMSTLLGKSNEISLKKIQKENALRFHVLQEFDEGKRSCQRRLAGHNKRRRKTHPDVADNGNSLNDDQASGYLLISLLRILSNVHPNNKSDQTKDQDLLSHILRSLARCSFHPNIG* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0994 116 ProSiteProfiles Zinc finger SBP-type profile. 1 53 IPR004333 GO:0003677
Vvi1g0994 116 MobiDBLite consensus disorder prediction 37 66 - -
Vvi1g0994 116 SUPERFAMILY SBT domain 25 58 IPR036893 GO:0003677|GO:0005634
Vvi1g0994 116 Pfam SBP domain 25 52 IPR004333 GO:0003677
Vvi1g0994 116 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 59 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0994 Vvi-Chr1 11124690 11127252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0994 25 107 SBP-box Gene Family AT3G60030 72.289 3.37e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi1g0994 SBP 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0994 - - vvi:100258912 157.918