Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0993 ATGGAAACCACTCATCGCTGCAAGCACTTGGTAACAAAATTATGGATACCTGACTATGATCTTGATGGCTACTCTGCTTCCACATCGTCTTCATTTGTTCGAGTTGACTTGACAATTTTATGGCAATCGGAGCATCAATGGATGAACCTAGCATTCGATGGGGCTGCATCTATTATCAGCAGATGTGTTGTTCATAGCTTGGCTTTACGACTGCCCTTACTTGATTATCAGGTCTTCATGTCCGACCACACCTCTCACCAAATGTTGTCTGGCGTGTTGTCGTCTATGGGAGTGGACCCAAATTTACATGATCGTATAATTGTCAAAATAGTTGCATTTGCACGAAGCATCCAAAACTTGGTATCCCACATGGATGCAGGCATGGTATTTCCACTACAGGCTAGAATAAGATTGGTAACTATGCATGTTCGCAATGAGCGGGTGTTGATTGATTTGGCTACTAGGGAATCAATGATAGAAAATGAGGGCAGAGGAAACGGGATGATTCCGGCAACTGAAATCTCAATCAAGACACTCAAGACGGAGACAATATTAGAGGGTGAAAGCTGTATGATATGTTTGGAAGAGTTGGGCGGTGGGTCGGAAGTGACAGTCATGCCATGTTCTCACGTCTTTCATGGTTCATGTATAATAAGGGAGTCCGGCCCCCCTTCCCTCTTCTTCTTCTTTTCCCTTCTGCTGCTTATTTGTTTCGTTCGTTTCTTTTCTGGCTTTAATTCTTTCCCTTTTCTGCTCCCTCCATCTTCACATCACCCTCCACACACCGCCGGCGTCACCTCCGCCATACTCTCACAGCCACCGCCGCTAACCATCAAGCCTTACCACAGGTCCTACCATCACCCTCCACCACGCAACTGCCGACTCATAGCCGCCACTGCACCGCTATCACAGCTCACTGTCTCTCATCGCCGCTCCTCTCCGACAGCTGGAGATGCAGTCATCTCCATCTCCACTGCCAGTCCAGAAACAATTACGGGACCCCACAGCCGCTCATCCCTCTCACCTCCACCGTTCGAGACGGCACCCCCACTGGAGTCCGGCCCCCCTTCCCTCTTCTTCTTCTTTTCCCTTCTGCTGCTTATTTGTTTCGTTCGTTTCTTTTCTGGCTTTAATTCTTTCCCTTTTCTGCTCCCTCCATCTTCACATCACCCTCCACACACCGCCGGCGTCACCTCCGCCATACTCTCACAGCCACCGCCGCTAACCATCAAGCCTTACCACAGGTCCTACCATCACCCTCCACCACGCAACTGCCGACTCATAGCCGCCACTGCACCGCTATCACAGCTCACTGTCTCTCATCGCCGCTCCTCTCCGACAGCTGGAGATGCAGTCATCTCCATCTCCACTGCCAGTCCAGAAACAATCACGGGACCCCACAGCCGCTCATCCCTCTCACCTCCACCGTTCGAGACGGCACCCCCACTGTCGCCGGCATCATCCACGATCGCGCGCCACCCCGCGCACATCTCTCGCTCACCCATCTCCAATTAA 1515 0.5129 METTHRCKHLVTKLWIPDYDLDGYSASTSSSFVRVDLTILWQSEHQWMNLAFDGAASIISRCVVHSLALRLPLLDYQVFMSDHTSHQMLSGVLSSMGVDPNLHDRIIVKIVAFARSIQNLVSHMDAGMVFPLQARIRLVTMHVRNERVLIDLATRESMIENEGRGNGMIPATEISIKTLKTETILEGESCMICLEELGGGSEVTVMPCSHVFHGSCIIRESGPPSLFFFFSLLLLICFVRFFSGFNSFPFLLPPSSHHPPHTAGVTSAILSQPPPLTIKPYHRSYHHPPPRNCRLIAATAPLSQLTVSHRRSSPTAGDAVISISTASPETITGPHSRSSLSPPPFETAPPLESGPPSLFFFFSLLLLICFVRFFSGFNSFPFLLPPSSHHPPHTAGVTSAILSQPPPLTIKPYHRSYHHPPPRNCRLIAATAPLSQLTVSHRRSSPTAGDAVISISTASPETITGPHSRSSLSPPPFETAPPLSPASSTIARHPAHISRSPISN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0993 504 MobiDBLite consensus disorder prediction 459 474 - -
Vvi1g0993 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 219 IPR013083 -
Vvi1g0993 504 ProSiteProfiles Zinc finger RING-type profile. 190 217 IPR001841 -
Vvi1g0993 504 MobiDBLite consensus disorder prediction 328 342 - -
Vvi1g0993 504 MobiDBLite consensus disorder prediction 459 504 - -
Vvi1g0993 504 SUPERFAMILY RING/U-box 177 219 - -
Vvi1g0993 504 Pfam RING-like zinc finger 190 217 IPR001841 -
Vvi1g0993 504 MobiDBLite consensus disorder prediction 483 504 - -
Vvi1g0993 504 MobiDBLite consensus disorder prediction 328 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0993 Vvi-Chr1 11114201 11117493 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0993 162 217 C3H Transcription Factor Family AT1G26800 46.552 6.85e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0993 - - vvi:104880051 429.483