Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0991 | ATGGAAACCACTCATCGCTGCAAGCACTTGGTAACAAAATTATGGATACCTGACTATGATCTTGATGGCTACTCTGCTTCCACATCGTCTTCATCTGTTCGAGTTGACTTGACAATTTTATGGCAATTGGAGCATCAATGGATGAACCTAGCATCCGATGGGGCTGCATCTATTATCAGCAGATGTGTTGTTCATAGCTTGGCTTTACAACTGCCCTTACTTGATTATCAGGTCTTCATGTCCGACCACACCTCTCACCAAATGTTGTCTGGCGTGTTGTCGTCTATGGGAGTGGACCCAAATTTACATGATCGTATAATTGTCAAAATAGTTGCGTTTGCACGAAGCATCCAAAACTTGGTATCCCACATGGATGCAGGCATGGTATTTCCACTACATTCTAGAATAAGATTGGTAACTATGCATGTTCGCAATGAGCGGGTGTTGATTGATTTGGCTACTAGGGAATCAATGATAGAAAATGAGGGCAGAGGAAACGGGATGATTCCGGCAACTGAAATCTCAATCAAGACACTCAAGACGGAGACAATATTAGAGGGTGAAAGCTGTATGATATGTTTGGAAGAGTTGGGCGGTGGGTCGGAAGTGACAGTCATGCCATGTTCTCACGTCTTTCATGGTTCATGTATAATAAGGTGGCTGAAGCAGAGCCATGTATGCCCCATCTGTCGCTTTGAGATGCCTACTTGCAGTCAGTAA | 720 | 0.4389 | METTHRCKHLVTKLWIPDYDLDGYSASTSSSSVRVDLTILWQLEHQWMNLASDGAASIISRCVVHSLALQLPLLDYQVFMSDHTSHQMLSGVLSSMGVDPNLHDRIIVKIVAFARSIQNLVSHMDAGMVFPLHSRIRLVTMHVRNERVLIDLATRESMIENEGRGNGMIPATEISIKTLKTETILEGESCMICLEELGGGSEVTVMPCSHVFHGSCIIRWLKQSHVCPICRFEMPTCSQ* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0991 | 239 | SMART | ring_2 | 190 | 230 | IPR001841 | - | |
| Vvi1g0991 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 237 | IPR013083 | - | |
| Vvi1g0991 | 239 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 144 | 235 | - | - | |
| Vvi1g0991 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 231 | IPR001841 | - | |
| Vvi1g0991 | 239 | SUPERFAMILY | RING/U-box | 177 | 235 | - | - | |
| Vvi1g0991 | 239 | Pfam | Ring finger domain | 189 | 231 | IPR001841 | - | |
| Vvi1g0991 | 239 | SMART | ringv_2 | 189 | 231 | IPR011016 | GO:0008270 | |
| Vvi1g0991 | 239 | CDD | RING-H2_PA-TM-RING | 189 | 231 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0991 | Vvi-Chr1 | 11067575 | 11068294 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0991 | 162 | 235 | C3H Transcription Factor Family | AT1G26800 | 47.368 | 4.78e-15 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g0991 | - | - | vvi:104880055 | 474.937 |