Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0989 ATGGAAACCACTCATCGCTGCAAGCACTTGGTAACAAAATTATGGATACCTGACTATGATCCTGATGGCTACTCTGCTTCCACATCGTCTTCATCTGTTCGAGTTGACTTGACAATTTTATGGCAATTGGAGCATCAATGGATGAACCTAGCATCCGATGGGGCTGCATCTATTATCAGCAGATGTGTTGTTCATAGCTTGGCTTTACGATTGCCCTTATTTGATTATCAGGTCTTCATGTCCGACCACACCTCTCACCAAATGTTGTCTGGCGTGTTGTCGTCTATGGGAGTGGACCCAAATTTACATGATCGTATAATTGTCAAAATAGTTGCGTTTGCACGAAGCATCCAAAACTTGGTATCCCACATGGATGCAGGCATGGTATTTCCACTACAGGCTAGAATAAGATTGGTAACTATGCATGTTCGCAATGAGCGGGTGTTGATTGATTTGGCTACTAGGGAATCAATGATAGAAAATGAGGGCAGAGGAAACGGGATGATTCCGGCAACTGAAATCTCAATCAAGACACTCAAGACGGAGACAATATTAGAGGGTGAAAGCTGTAGGATATGTTTGGAAGAGTTGGGCGGTGGGTCGGAAGTGACAGTCATGCCATGTTCTCACGTCTTTCATGGTTCATGTATAATAAGGTGGCTGAAGCAGAGCCATGTATGCCCCATCTGTCGCTTTGAGATGCCTACTTGCAGTCAGTAA 720 0.4431 METTHRCKHLVTKLWIPDYDPDGYSASTSSSSVRVDLTILWQLEHQWMNLASDGAASIISRCVVHSLALRLPLFDYQVFMSDHTSHQMLSGVLSSMGVDPNLHDRIIVKIVAFARSIQNLVSHMDAGMVFPLQARIRLVTMHVRNERVLIDLATRESMIENEGRGNGMIPATEISIKTLKTETILEGESCRICLEELGGGSEVTVMPCSHVFHGSCIIRWLKQSHVCPICRFEMPTCSQ* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0989 239 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Vvi1g0989 239 SUPERFAMILY RING/U-box 177 235 - -
Vvi1g0989 239 SMART ring_2 190 230 IPR001841 -
Vvi1g0989 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 237 IPR013083 -
Vvi1g0989 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 235 - -
Vvi1g0989 239 Pfam Ring finger domain 189 231 IPR001841 -
Vvi1g0989 239 CDD RING-H2_PA-TM-RING 189 231 - -
Vvi1g0989 239 SMART ringv_2 189 231 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0989 Vvi-Chr1 11038247 11038966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0989 150 239 C3H Transcription Factor Family AT1G18760 34.043 8.33e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0989 - - vvi:104880056 474.167