Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0987 ATGGAGAGCTTCTGGGTTTTCTTCTGTTTCTTGTTTTCTGTAATCATTTTCCCAGTTTCCATGGGGCAACTGACTCCGACAGAAGGTCGAATTCTTCTCCAAGTTCAGCAACTTCTCGAGTACCCAGAAGCTCTTCAAGGCTGGAACAACTGGACTAGCTTCTGCTATCTTCCTCACTCGCCCTCTCTCAAGATCGTCTGTACAGATAATCGCGTGACTGAATTAACTATCATCGGAAACAAAAGCTCGCCTTCTGTTTCCGGGGACTTGAAGGTATCTCAGCAGACACTGTCCGAGAAATTCTCCATTGATGCTTTCTTCACAGTTCTAACCAAGCTCTCACACGTCCAAGTGCTGTCACTAGTGTCCTTGGGAATGTGGGGTCACTTGCCACCAAAGGTTAATAGGTTCCAAGCACTGGAAGTGCTGAATATCAGTTCAAATTTCATCTATGGAGAGCTTCCCCGGACAATCTCAACTTTTATAAGTCTTAGGAGTATTGTGCTGGCTGATAATTTGTTGAATGGGAGCGTTCCGGATCTTAGAAGCTTGCTTCTTCTTGAAGAACTCAACCTGGGTGACAATCGCTTTGGACCTGAATTTCCTTCTCTGGGAGCCAGTTTGGTTAGTGTGGTACTGAAGAACAATTCTCTAAGATCTGTTATTCCTTTAGGACTCATGAATTTTGATAGGCTTCAGCAATTCGATATCTCTTCCAACAAATTTGTGGGACCGATCCCGTCTTCCATATTTTATCTGCCTTCAATTCAGTACCTCAATTTGGCCAAAAATCAATTCACGGGGGCCTTTCAAACAAATATATCCTGCAGTGGTAACCTCAGATTTGTGGATATTTCGCACAACCATTTGATAGGAAAGTTGCCCTCCTGCGTTAGATCAAATTCTTCGAATTTGACTGTTATCAGTTCTTGGAACTGTTTATCTGGTGGAAACTTGGGTTATCAGCTTCCCAATTCAGTCTGCCGAAAAGAAGCATTGGCTGTTAAGCCTCCAACAAGAAATGATGCGCAGAAGTCCAGCAGCAAACTAGGCCTGATACTTGGTGTGGTGGCAGGCATTGTGGGGGTTCTGGTGGTTCTGGGGCTGTTGACTTTGGCCATTTTCAGAAAATCACGACCAAATAAATCTGAAACAGATATATTTAATCAAGGATCGGTTGCTTATAAGTCTCCTCTTCACAGCTCCTCCAAACCAATCAGCGAAGCAAGACATGTGCCCACCACAATGGGGTTCGGCACACTGGGGCTCCCACCGTATCATGTTTTCACTTTGGAAGAAATGGAAGACGCAACAAACAACTTCGATCCATCTAATTTGATAGCAGAGGGATCTCAAGGACAGTCCTACAAAGGGTGGCTCAGAGATGGCTCAGAAGTCCTGGTGAAATGTCTGAAATTGAAGCACAAGCATTCACCTCAAAGCTTGCCACAGCAAATGGAAGCAGTAACAAAACTGAGGCATCAACATTTGGTCAGCGTTCTTGGACACTGTATTGTCACATACCAGGAACATCCCAATACCGCTAGCACGGTCTTCCTCGTCGTTGAACATGTTGCAAACGGGTCGCTCAGGGATCATCTTACTGACCGGAGGAGAAGAGAGATACTGAAATGGCCGCAGAGATTGGGAATCTCCATTGGCATTGCAAGGGGAATCCAGTTCTTGCACACTGGAAATGCACCAGGCATTTTTGGGAACAATTTGAAGATTGAGAATGTGCTGTTGAATGAGAAGCTTACTACAAAGATTAGTAACTACAATATTCCCTTGAGATTTAAGGTGGGTTCAGAAAGCCCTCTCAATGGACCAAAGTTCCGCAGTGATCTCCAAGGTGCCCAAGAGGCGGAAAGGGATGATATTTATCAGCTGGGTGTAATTCTGCTTGAAATCATCACTGGAAAGCAAGTAACAAGCGAGAGTGAATTGGATGAGTTGAAACTCCAGCTGGAAAGGGGCTTAACGGAAGCGGCATCAAAACTCCGGGCATTAACAGACCCCTCAATTCGTGGTACCTTCGCTTATGAATCATTGACAAACACTGTCCAAATCACCCTCAACTGTCTCTCCAAGGATTCCAGGAAGCGCCCATCAATAGCAGATGTCCTTTGGAACTTGCAGTACTCAGTTCAAGTTCAGGAAGGATGGGCAAGCAGTGAAGGCCTTAGCACCCAGCCGCAATGCTAG 2205 0.4522 MESFWVFFCFLFSVIIFPVSMGQLTPTEGRILLQVQQLLEYPEALQGWNNWTSFCYLPHSPSLKIVCTDNRVTELTIIGNKSSPSVSGDLKVSQQTLSEKFSIDAFFTVLTKLSHVQVLSLVSLGMWGHLPPKVNRFQALEVLNISSNFIYGELPRTISTFISLRSIVLADNLLNGSVPDLRSLLLLEELNLGDNRFGPEFPSLGASLVSVVLKNNSLRSVIPLGLMNFDRLQQFDISSNKFVGPIPSSIFYLPSIQYLNLAKNQFTGAFQTNISCSGNLRFVDISHNHLIGKLPSCVRSNSSNLTVISSWNCLSGGNLGYQLPNSVCRKEALAVKPPTRNDAQKSSSKLGLILGVVAGIVGVLVVLGLLTLAIFRKSRPNKSETDIFNQGSVAYKSPLHSSSKPISEARHVPTTMGFGTLGLPPYHVFTLEEMEDATNNFDPSNLIAEGSQGQSYKGWLRDGSEVLVKCLKLKHKHSPQSLPQQMEAVTKLRHQHLVSVLGHCIVTYQEHPNTASTVFLVVEHVANGSLRDHLTDRRRREILKWPQRLGISIGIARGIQFLHTGNAPGIFGNNLKIENVLLNEKLTTKISNYNIPLRFKVGSESPLNGPKFRSDLQGAQEAERDDIYQLGVILLEIITGKQVTSESELDELKLQLERGLTEAASKLRALTDPSIRGTFAYESLTNTVQITLNCLSKDSRKRPSIADVLWNLQYSVQVQEGWASSEGLSTQPQC* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0987 734 Gene3D Transferase(Phosphotransferase) domain 1 525 725 - -
Vvi1g0987 734 Gene3D Ribonuclease Inhibitor 26 204 IPR032675 -
Vvi1g0987 734 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 25 206 - -
Vvi1g0987 734 SUPERFAMILY L domain-like 85 321 - -
Vvi1g0987 734 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 525 727 - -
Vvi1g0987 734 SUPERFAMILY Protein kinase-like (PK-like) 421 712 IPR011009 -
Vvi1g0987 734 Gene3D Ribonuclease Inhibitor 205 337 IPR032675 -
Vvi1g0987 734 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 414 514 - -
Vvi1g0987 734 Gene3D Phosphorylase Kinase; domain 1 417 511 - -
Vvi1g0987 734 Pfam Protein tyrosine and serine/threonine kinase 446 709 IPR001245 GO:0004672|GO:0006468
Vvi1g0987 734 ProSiteProfiles Protein kinase domain profile. 441 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0987 734 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 352 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0987 Vvi-Chr1 11014072 11016961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0987 41 722 Miscellaneous Gene Families AT3G03770 40.108 3.55e-178 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vvi1g0987 PK_Tyr_Ser-Thr 2.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0987 - - vvi:100245028 1402.11