LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0982	ATGGAGGCTGCTGCTTTGGAGATACCCGTGTCTGGTGATCCAGTTAAGGGAGAAGAGACAACCCTGATGAAATTTAACGGCGGAGATAAAGGGGGTGTTTGTGATTCCATGAAGGTGCATCTTGTGGCCGCCACAGAAAGATCATCCATGGAGAACAATTCAATAGACCCCTCAACACAAAAGAATCAGGAGGATCGGATCAAATCAGCCAAAGAAGAGGTGGGCGAGGTTAGAGAAGAAAATGAAAGGTTGAAGCAGATATTAGCAAAAATCAAGAAGGACTACCAGTCACTGCAAATGCAGTTCAGTGAAATTGCTCAACATGAGGAAGCTAGGAAATCTACAGATACAATTCTTACTCATCAGGAAGAAGAAGAAGAAGAAACTGATCTTATCTCCCTTAGCCTAGGAAGAGTTTCAAGTGCCGAGTCTAAGAAGGATGACAAAAAGACAAGCTTTCTGAGTGGTAAAGGAAAAGGGGATGAGAAGATGGATGAAGGACTTGCACTAGGGCTGGAATGCAAATTTGAACCCGCCCCTACCGAACACATGATGAATGCAAGCCCTGAAAATAGCTTTGAAGGACCCAAGGAAGAGGAGCCCTCTACTGAGACATGGCCACCCAGTAAGATTCTAAAGATGGGGAGAAGTCGGGATGAAGAAGTTTTAGAGCAAACCCATTTGAAGAAAGCTAGGGTTTCTGTCCGAGCTAGATGCGACACCCCCACGATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAAATAGCAAAAGGAAACCCTTGCCCTAGAGCATACTACCGGTGCACAGTCTCACCATCATGCCCTGTGAGAAAGCAGGTGCAAAGATGTGCGGAGGACACGTCCATCTTGATCACCACCTATGAAGGAACTCACAACCACCCACTTCCTGTTTCAGCAACAGCAATGGCTTCCACCACATCTGCTGCCGCCTCCATGCTACGCTCCGGCTCCTCCACCTCACAACCAGGCATGGAGGCCTTCGCTACCTCCTCTACTGCCAACCTCCACGGCTTAAACTTTTCTATACCCCAAAATTCAAGATCACAGCAATTCTACTTCCCCAATTCTTCATTCTCAACTTCCAATTCACACCCAACTATCACTCTTGATCTCACTGCACCAACTGCTTCTCATTTCAATAGGTTGTCTTCAAGTTTCCCTTCTGCACCAAGATATCCTGCAACTTGCCTCAACTTTTCTTCTTCTTCATCTTCGTCTCCTTTAGATCCCAACAACCTACCAACATCTTGGGGTACCCTTCCTAGTTATGGGGCACTGTCGTCCTACAACAAAAACCAGATTGGGCCTTTCAACTTTGGAATGCAACCACCCTCCCAAGAAAACATTTATCAACCTTACATGCAGAAGATCAACAACCAGGCTCCTTCCCAACAATCTCTTACAGAGACCATAGCCACCGCAACCAAGGCAATCGCAGCCGACCCGACATTCCGATCAGCATTAGCTGCTGTCATCACGTCATTTGTTGGTAATGCAGGTGGTGCAGGTGGAGGAGAGAACCACGTCAAGGGAGAAAACCCTAGCCATAATTTGAAGTGGGGTGAGTTCTTATCTGTGAACTCCGCATTGGCATCTTCTCATAATGGAGTAGGGTGTGCCTCAAGTTACTTGAACCGTTCCTCTTCTGCAAATTCTCAACAACAAGGGAACTTGATTTCGTACCCGCCTTCATTTCCATTTTCTGTACCTAAGAGTGCTTCTGCTTCCCCTTCTGATCACAAAGATAATATCCAGTGA	1785	0.4639	MEAAALEIPVSGDPVKGEETTLMKFNGGDKGGVCDSMKVHLVAATERSSMENNSIDPSTQKNQEDRIKSAKEEVGEVREENERLKQILAKIKKDYQSLQMQFSEIAQHEEARKSTDTILTHQEEEEEETDLISLSLGRVSSAESKKDDKKTSFLSGKGKGDEKMDEGLALGLECKFEPAPTEHMMNASPENSFEGPKEEEPSTETWPPSKILKMGRSRDEEVLEQTHLKKARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVRKQVQRCAEDTSILITTYEGTHNHPLPVSATAMASTTSAAASMLRSGSSTSQPGMEAFATSSTANLHGLNFSIPQNSRSQQFYFPNSSFSTSNSHPTITLDLTAPTASHFNRLSSSFPSAPRYPATCLNFSSSSSSSPLDPNNLPTSWGTLPSYGALSSYNKNQIGPFNFGMQPPSQENIYQPYMQKINNQAPSQQSLTETIATATKAIAADPTFRSALAAVITSFVGNAGGAGGGENHVKGENPSHNLKWGEFLSVNSALASSHNGVGCASSYLNRSSSANSQQQGNLISYPPSFPFSVPKSASASPSDHKDNIQ*	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0982	594	ProSiteProfiles	WRKY domain profile.	239	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	141	164	-	-
	Vvi1g0982	594	Gene3D	WRKY domain	229	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0982	594	SMART	WRKY_cls	244	304	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	61	79	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	106	164	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	46	60	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	44	79	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	106	120	-	-
	Vvi1g0982	594	SUPERFAMILY	WRKY DNA-binding domain	237	305	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0982	594	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	50	521	IPR044810	GO:0003700
	Vvi1g0982	594	Coils	Coil	60	101	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	556	594	-	-
	Vvi1g0982	594	Pfam	WRKY DNA -binding domain	245	303	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0982	594	FunFam	probable WRKY transcription factor 31	229	306	-	-
	Vvi1g0982	594	MobiDBLite	consensus disorder prediction	179	210	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0982	Vvi-Chr1	10977297	10982423	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0982	74	581	WRKY Transcription Factor Family	AT5G15130	40.809	6.87e-89	282

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vvi1g0982		WRKY	2.7e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g0982	-		-	vvi:100262076	1127.46